Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq198 147 3e-30 seq112 131 2e-25 seq188 98.7 1e-15 >seq198 Length=398492 Score = 147 bits (162), Expect = 3e-30 Identities = 544/843 (65%), Gaps = 16/843 (2%) Strand=Plus/Minus Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 ||||| | ||||| ||||| || || | | |||||||| | || || || ||| Sbjct 355140 GATGCAAGGTTGCACACAGCTACTTCGTCAGGAGCGGTGTACTCGATGATCTCGGTGCAC 355081 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 |||||||| || ||| || ||||| ||||| ||||| ||||| |||| || || Sbjct 355080 AAGTTGGAGCTGCGAATTGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCT 355021 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647 ||||| |||||||| || | || ||||| ||||| | || |||||| || | ||| | | Sbjct 355020 TTGTACAGCATGTACGGGTTGCCAGTCTCGGTCTGAGCCTCGAGAATGGCATACCAAATC 354961 Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGC-CTCGTACTTTGTGTAGAGGG 106706 || | ||| | | | | | ||| | ||| ||| |||||| ||||||||| | Sbjct 354960 TTCTG-GGCGCGCATAGT----CTCACCCTTGCCTTCGCTTTCGTACCGTGTGTAGAGCG 354906 Query 106707 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 106766 |||| ||||| || || | | |||| || || || || || || || | || | Sbjct 354905 CTTCGAACTCATCCCCGTACACATCGGCAAGGCCGGGGCACTCGTTCGGGCACATCAGTG 354846 Query 106767 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 106826 ||| | | | || | || ||||||||||| || || || |||||||| | | | Sbjct 354845 TCCAATCAGCGTTATCTTGCACACGCTTCATGAAGAGATCAGGGATCCACAGAGCGTAGA 354786 Query 106827 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 106886 | | || | | || |||| || | || ||||| || | |||||||| || Sbjct 354785 ACAAGTCACGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGGACA 354726 Query 106887 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAG 106943 ||| || |||||||| ||||| || |||| |||| | || ||| ||| Sbjct 354725 AGATGTCTGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCGGGTCGCTTGTTGCCAC 354666 Query 106944 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 107003 | || | ||||| | || ||| ||| || || || ||||| || | | ||| | || Sbjct 354665 CCTGGTCGACATACCTAGCAGTGTTGTTGAACACCCGTAGCATGGGTACGAGACCGTTTG 354606 Query 107004 ATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATGGATGTGCAT 107061 || |||||||| ||| || |||||| | | || | | ||| || | Sbjct 354605 ATGTGCCATTTGTACCCGCAATGTACGAG--CCAGTCGCCCGAATGCGATGTGCGTTGAG 354548 Query 107062 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 107121 || || || || || || ||||| |||||| | | || || | || || || Sbjct 354547 TCCGATGCCACCGGCGTTTTTCGAGATCATCGCACAAGTCTTCAGCGTGTCGTAAATGCC 354488 Query 107122 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 107181 | || ||| ||||| || |||| |||||||| | | || | | ||||| Sbjct 354487 CTCAATGCTGTCGTCCTTCATGTCGATCAGGAAGCATGAAGCAAGTTGTGCTTGAGGTGT 354428 Query 107182 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGT 107240 ||||| |||| || || || | || || |||| |||| | | |||||| | || || Sbjct 354427 GCCAGCGCTGAACAGCGTCGGCGAAGCATGTGTGAA-ATACTTGTTGGACATGTAGTTGT 354369 Query 107241 ATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACA 107300 | ||||| | | | ||||||||| || ||||| || || | || |||||||| | || Sbjct 354368 ACGTCTCGATCGCCGCATCAATGTCCTCGCCGTGTATACCTACAGCGACACGCATGATCA 354309 Query 107301 TGT 107303 ||| Sbjct 354308 TGT 354306 >seq112 Length=1778705 Score = 131 bits (144), Expect = 2e-25 Identities = 338/502 (67%), Gaps = 16/502 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || |||||||| |||||||| ||||| || | ||| ||||| ||||| Sbjct 1417149 TAGTCACCTACGCGCTTCTCGAAGAAGTTTGTCTTGCCGGCGAGGGAGATGTTCTCCATG 1417090 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCA--AATGG--GTGGCACCCCAACTTGTTTGAGGAG 117101 ||||| || || || | || || | | | | ||||| | | | ||| || Sbjct 1417089 AAGTCGAAGGGGTTGGTGGCATTGTAGTACTTGCTGTGGC----CGAGTGCGAGGAGTAG 1417034 Query 117102 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT 117161 ||| || | ||| |||| ||||||| | |||| || | |||||| |||| || Sbjct 1417033 ACGGTCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGC 1416974 Query 117162 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 117221 || || || |||||| | | |||| ||| ||| ||||| || ||||| | | ||| Sbjct 1416973 GCAGGGCAGGGCGTCCGATAGGAACTCTTGCTCGATCTCGACGGCCTCGGTGATGATCTG 1416914 Query 117222 GTGGATAGTTTCG-GTAGTGGGTCTATTACGCAAA-GT-CTTGAAGAGCTCCACGGCAAA 117278 ||||| ||| || ||| | | || || | | || | || || | || |||||| Sbjct 1416913 GTGGACGAGGTCGAGTGATGGCT-TGTTGCGGAGATGTGCGTGCAGCA-TGCA-GGCAAA 1416857 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 || ||| | ||||| || || || || || ||||| ||||| ||||| ||||| Sbjct 1416856 GTCGGTGTGCATGCCCTCGTCACGCGAGATGAGCTCATTAGAGAACGTGAGGCCGGGCAT 1416797 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 ||| || |||||||| | ||| | || || ||| || |||||||||||||||||||| Sbjct 1416796 GAGGCCGCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGAGCCGGAGAAGAAGATACCCTC 1416737 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATT 117457 ||| || || || | ||| || | |||||| ||| | | || | | ||| | Sbjct 1416736 AACAGCTGCGAAGGCGATAAGACGGCAGCCGAAGG-TCGATGCGTCGTCGCTGATCCACT 1416678 Query 117458 TCATTGCCCATTTCGCCTTCTT 117479 | | |||||| || |||||||| Sbjct 1416677 TTAGTGCCCAGTTAGCCTTCTT 1416656 >seq188 Length=510084 Score = 98.7 bits (108), Expect = 1e-15 Identities = 199/287 (69%), Gaps = 9/287 (3%) Strand=Plus/Minus Query 9359 TTGCTTTCCCACG-GCATCAATCTCATCAATGAAGACAATACATG--GTTGATTTTCGCG 9415 ||||||| ||| ||||| |||||||||||||||| || |||| || || ||| || Sbjct 119347 TTGCTTTTCCAATAGCATCGATCTCATCAATGAAGATGATGCATGGTGTCGACTTT--CG 119290 Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || | | || || || || || | | || |||||||||||||||||||| || Sbjct 119289 TGCATTGGCGAACAGGTCTCGCACACGGGAAGGACCGACACCAACAAACATCTCCACGAA 119230 Query 9476 GTTTGCGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534 | | | || || | || |||||| ||| ||||||||| || ||||| |||| Sbjct 119229 TTCGGACCCTGACACGCT-GAAGAAGGGCACACCAGATTCACCGGCCGTGGCTTTTGCGA 119171 Query 9535 GAAGAGTCTTACCCGTACCTGGCTTACCCGC-GAGGAGGGCACCCCGTGGAATCTTGGCG 9593 | | |||||||| ||||| || | |||| || | || || ||||||||||| ||| Sbjct 119170 GCAACGTCTTACCAGTACCAGG-TGGTCCGCTCAGAATCGCGCCTCGTGGAATCTTCGCG 119112 Query 9594 CCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 ||| | | | | |||| |||||||| | || | ||||| ||| Sbjct 119111 CCAAGTTTAGTGAAGATCTCGGGTTGCTTCAAGAATTGCACAAACTC 119065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978830939080