Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq194 105 5e-17 seq192 96.9 3e-14 >seq194 Length=423655 Score = 105 bits (116), Expect = 5e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | |||||||| ||||| || || ||||| || ||||||||||| || || ||| Sbjct 399021 GCAGTCGTCACTGTACCCGCATACTTCAACGACTCCCAGCGTCAAGCTACCAAGGACGCT 399080 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | || ||||| || || || || || || ||||| || || ||||||||||| || Sbjct 399081 GGTCTCATCGCTGGGCTGAACGTCCTCCGCATCATCAACGAGCCGACTGCTGCTGCCATT 399140 Query 550520 GCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGA 550579 || || || ||||| || | | ||| || | || || || ||||| || | ||| Sbjct 399141 GCCTACGGTCTTGACAAGAAGACTGAGGGCGAGCGCAACGTGCTTATCTTCGACTTGGGA 399200 Query 550580 GGT 550582 ||| Sbjct 399201 GGT 399203 >seq192 Length=480423 Score = 96.9 bits (106), Expect = 3e-14 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | ||||| || ||||| || || ||||| || || ||||| || || || || Sbjct 147262 GCAGTCGTCACTGTGCCCGCATACTTCAACGACTCCCAGCGCCAAGCCACCAAGGACGCC 147203 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | ||||||||||| || || || || || ||||| || || |||||||||||| || Sbjct 147202 GGTCTCATTGCTGGACTGAACGTCCTCCGCATCATCAACGAGCCGACTGCTGCTGCAATT 147143 Query 550520 GCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA 550572 || || || || || || | | ||| || | || || |||||||| || Sbjct 147142 GCCTACGGTCTCGACAAGAAGACTGAGGGCGAGCGCAACGTGCTCATCTTCGA 147090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029281879835830