Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq206 89.7 7e-13 seq113 84.2 3e-11 >seq206 Length=1270293 Score = 89.7 bits (98), Expect = 7e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 197391 CATAAGTTCCCTCCTCTCTCTGAAGCTCTTGTTGACCTGAGACACTCCGTTCATGTACAA 197450 |||||| || | | || | |||| |||||||||| | | | ||||| | | | | Sbjct 366278 CATAAGGTCTCGTCGTTCGCGGAAGGGCTTGTTGACCAGTGCTTCGCCGTTGAGGAAGAG 366219 Query 197451 CACGTCAAAAGCAAAGACGCACACCTGGACGGTTATCTCTTCTTCCTTGACATCTTTACG 197510 || || || || |||||||| || | ||| | || |||||| ||| |||||||| Sbjct 366218 GACATCGAATGCGAAGACGCAGACTTTGACTTTGATATCTTCTGTCTTCACATCTTTCTT 366159 Query 197511 TTTTCTGGTCGCCAGCTTTTGAAAGGGAAGGATCTGCTTCTTCTCAACGTCCCAAGCAAC 197570 || || ||| |||| ||| || || |||| ||||||||||| || ||||| || || Sbjct 366158 CTTCCTTGTCATGAGCTGTTGGAATGGTAGGACGTGCTTCTTCTCGACATCCCAGGCTAC 366099 Query 197571 TGCCTCAGCGTCCA 197584 || |||| ||||| Sbjct 366098 TGTCTCACAGTCCA 366085 >seq113 Length=896820 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 197419 TTGTTGACCTGAGACACTCCGTTCATGTACAACACGTCAAAAGCAAAGACGCACACCTGG 197478 ||||||||| | | | | ||||| | | | | ||||| || || |||||||| |||| | Sbjct 195288 TTGTTGACCAGTGCCTCGCCGTTGAGGAATAGAACGTCGAAGGCGAAGACGCAGACCTTG 195229 Query 197479 ACGGTTATCTCTTCTTCCTTGACATCTTTACGTTTTCTGGTCGCCAGCTTTTGAAAGGGA 197538 || | || || ||| ||||||||| || || || ||| |||| || || || Sbjct 195228 ACTTTGATGTCCTCTGTCTTGACATCCTTCTTCTTCCTCGTCATAAGCTGCTGGAATGGC 195169 Query 197539 AGGATCTGCTTCTTCTCAACGTCCCAAGCAACTGCCTCAGCGTCCA 197584 |||| ||||||||||| || ||||| || |||| ||| ||||| Sbjct 195168 AGGACGTGCTTCTTCTCGACATCCCAGGCTACTGTTTCACAGTCCA 195123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676727341414960