Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq242 98.7 3e-15 seq182 84.2 6e-11 >seq242 Length=86577 Score = 98.7 bits (108), Expect = 3e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 |||||| |||||||||||||||| ||||||||||| || |||||||| |||| || | Sbjct 53145 GCGAGACCACCAAGCGAGTCACGATCGAGGAAATTCGTCGGTTCGTCGAGGACGAGGAGA 53086 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 ||||| | ||||||| || | |||| || ||||| || ||||| || ||||| || Sbjct 53085 TGCGGGTTGTTCCACATGGCACCCGCCAACACAACCTTGACTTTCTGCCCTCCTGACAG 53027 >seq182 Length=708831 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 ||||| | || || ||||| |||||||||||||| || ||||||||||||| || | Sbjct 684334 GCGAGGCCTCCGAGGGAGTCGCGGTCGAGGAAATTGGTTGGTTCGTCAAGGACGAGGAGA 684275 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 ||||| | ||||||| || | |||| || ||||| || ||||| || ||||| || Sbjct 684274 TGCGGGTTATTCCACATGGCGCCCGCCAACACAACCTTGACTTTCTGGCCTCCTGACAG 684216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471812565003979