Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq184 116 2e-21
seq228 113 3e-20
seq207 104 2e-17
seq193 91.5 1e-13
seq204 89.7 3e-13
>seq184
Length=1511567
Score = 116 bits (128), Expect = 2e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | || ||||||||| ||||||||||| || || |||| | ||
Sbjct 735716 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCGGAAAGAGTGCGGCCGTCC 735775
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| |||||||| || || || || |||||| | || | |||||||||||
Sbjct 735776 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATACCCTCCTTGTCC 735835
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | ||| || || | ||| ||||||
Sbjct 735836 TGGATCTTCGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCGAGGGTGATGGTC 735895
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || ||||| ||||| || |||||||||||
Sbjct 735896 TTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 735927
Score = 107 bits (118), Expect = 1e-18
Identities = 150/208 (72%), Gaps = 8/208 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || |||| |||| ||| ||||| ||||| ||||| || ||| |||| ||||
Sbjct 735944 AGGACGAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 736003
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||||||||||| || ||||||||| | || | |||||||||||
Sbjct 736004 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 736063
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || | ||| || |||| ||| ||
Sbjct 736064 TGGATCTTGCTCTTGAC--AT--TGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGAT 736119
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAG 34969
|||||| || || | ||| || || |||
Sbjct 736120 GGTCTTGCCGGTCAAGGTTTTGACGAAG 736147
>seq228
Length=1254254
Score = 113 bits (124), Expect = 3e-20
Identities = 151/208 (73%), Gaps = 8/208 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || || | |||| ||||||||| ||||| || || || ||| |||| ||||
Sbjct 556029 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCC 556088
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||||||||||| || ||||||||| |||| | ||||| |||||
Sbjct 556089 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTCT 556148
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || | ||| || |||| ||| ||
Sbjct 556149 TGGATCTTGCTCTTGAC--AT--TGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGAT 556204
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAG 34969
|||||| || || | ||||||||| |||
Sbjct 556205 GGTCTTGCCGGTCAAGGTCTTTACGAAG 556232
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | || |||||||| ||||| ||||| || || | || | ||
Sbjct 555801 AGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCGTCC 555860
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||||||||| || || ||||||||| | || | |||||||| ||
Sbjct 555861 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTATCC 555920
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | || || ||| || || | ||| ||||||
Sbjct 555921 TGGATCTTCGACTTCACGTTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 555980
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || ||||||||||| || |||||||||||
Sbjct 555981 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 556012
Score = 100 bits (110), Expect = 2e-16
Identities = 94/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||||||||||| || ||||||||| ||||| ||||| || ||| |||| | ||
Sbjct 1165059 CAGGACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTC 1165000
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| ||||||||||||| || |||||||| | || | |||||||||||
Sbjct 1164999 CTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 1164940
>seq207
Length=296016
Score = 104 bits (114), Expect = 2e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| || || || | | | |||| || || |||||||||||||| |
Sbjct 212925 CCTTCTGGATGTTGTAATCGCTCAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCGAAAA 212984
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| || ||||||||| |||| | ||||||||||| | || || |||||
Sbjct 212985 TCAACCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 213044
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| |||| || || |||||| || | ||| |||||||| |||||||||||||| || |
Sbjct 213045 CGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 213104
Query 34968 AG 34969
||
Sbjct 213105 AG 213106
>seq193
Length=432561
Score = 91.5 bits (100), Expect = 1e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| | ||||| ||| ||| ||||| ||||| ||||| || ||| |||| | ||
Sbjct 90600 CAGGACTAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTC 90659
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| ||||||||||||| || |||||||| | || | |||||||||||
Sbjct 90660 CTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 90719
>seq204
Length=319970
Score = 89.7 bits (98), Expect = 3e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| || || || | | |||| || || |||||||||||||| |
Sbjct 82046 CCTTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 81987
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| || ||||||||| |||| | ||||||||||| | || || |||||
Sbjct 81986 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 81927
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| |||| || | ||| || |||| ||| || ||||| |||||||||||||| || |
Sbjct 81926 CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGA 81867
Query 34968 AG 34969
||
Sbjct 81866 AG 81865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325691740175273
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |