Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq183 89.7 5e-13 seq217 84.2 2e-11 >seq183 Length=685938 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 21749 CCCGAAATAGGCGACAAGTTCTGTTCCGGCATGGCCCAGAAAGGCACCTGCGGGATGATC 21808 ||| | || ||||||||||| |||| || | |||||||| ||| || || | | Sbjct 169593 CCCCAGATCGGCGACAAGTTTGCTTCCCGCCACGGTCAGAAAGGTACCATTGGTATCACC 169534 Query 21809 TATTCGCAAGAAAACATGCCATTCACATCTTCCGGCATGACCCCCGACATCATCATCAAC 21868 ||| |||||| ||||||| |||||| | ||||| ||||||||||||||||| Sbjct 169533 TATCGCCAAGAAGACATGCCCTTCACAGCCGATGGCATCGTTCCCGACATCATCATCAAT 169474 Query 21869 CCCAACTGCATTCCCTCCAGAATGACCAT 21897 || || |||||||||| | |||||||| Sbjct 169473 CCTCACGCCATTCCCTCCCGCATGACCAT 169445 >seq217 Length=1262075 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 21755 ATAGGCGACAAGTTCTGTTCCGGCATGGCCCAGAAAGGCACCTGCGGGATGATCTATTCG 21814 || || ||||||||| ||| || | |||||||| || ||| || | ||| Sbjct 961052 ATTGGTGACAAGTTCGCCTCCCGCCACGGTCAGAAAGGTACAATCGGTATTACCTACCGC 961111 Query 21815 CAAGAAAACATGCCATTCACATCTTCCGGCATGACCCCCGACATCATCATCAACCCCAAC 21874 |||||| ||||||| |||||| | |||||| |||||||||||||||||||||| || Sbjct 961112 CAAGAAGACATGCCTTTCACAGCCGACGGCATCGTCCCCGACATCATCATCAACCCCCAC 961171 Query 21875 TGCATTCCCTCCAGAATGACCATT 21898 || |||||| | ||||| ||| Sbjct 961172 GCTATCCCCTCCCGCATGACAATT 961195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521543859341560