Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq228 102 5e-17
seq184 87.8 1e-12
>seq228
Length=1254254
Score = 102 bits (112), Expect = 5e-17
Identities = 158/222 (71%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | || | ||| || ||| ||| || || ||||||||||||||
Sbjct 556013 ACCACCACGCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 556072
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| ||||| | || || | || || ||||| || ||||| |||||||| ||| ||||
Sbjct 556073 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGG 556132
Query 33642 CACACCTTCTTTGTC-GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| || |||||||| | | || || || |||| ||| | ||||||| |||
Sbjct 556133 GATGCCCTCTTTGTCTTGGATCTTGCTCTT--GACATTGTCGATGGTGTCGGAGCTCTCC 556190
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAG 33741
|| |||| ||||| || || || || || || ||||| |||
Sbjct 556191 ACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTTACGAAG 556232
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| || | |||||| | |||||| || || || ||| || || |||||||| |||
Sbjct 555558 CCTCCACGCAAACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 555617
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || || |||| ||||| || || || || || || | ||||||||||||| | ||
Sbjct 555618 AACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGG 555677
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||| || || || ||| ||| ||| || | ||| | ||||| |||||||||
Sbjct 555678 ATACCCTCCTTATCCTGAATCTTCGACTTC-ACGTTGTCGATTGTGTCTGATGATTCCAC 555736
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| | |||||| || || ||||| | || || || ||||| ||||||
Sbjct 555737 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCATA 555785
>seq184
Length=1511567
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| ||||| ||| || || ||||| || ||||| || ||||| |||| || | |||
Sbjct 735725 TGGAGAGTCGACTCCTTCTGGATGTTATAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGC 735784
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| ||||| ||||| | ||||| || ||| | || | ||| || ||||| || |||
Sbjct 735785 TTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATACCCTCCTTGTCCTGGATCTTC 735844
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
|| | | | ||| | ||||||| ||| || || || | ||||| || || || ||
Sbjct 735845 GACTTGA-CGTTGTCGATGGTGTCGGATGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 735903
Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750
| ||| || || ||||||||||||
Sbjct 735904 GAGCGTCTTGACGAAGATCTGCATA 735928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328702930376640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |