Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq112 224 1e-52 seq1 210 3e-48 seq198 109 8e-18 seq176 96.9 5e-14 seq206 93.3 6e-13 seq199 87.8 3e-11 >seq112 Length=1778705 Score = 224 bits (248), Expect = 1e-52 Identities = 364/510 (71%), Gaps = 18/510 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| |||||||| || ||||| ||||| || || ||||| || |||||| |||| | Sbjct 1416307 GATATGGCAAATGTAC-AAGAAGGCAGAGGCATCGTTCTGGACAGCAGAGGAGATCGATC 1416365 Query 1455835 TCGGCGCCG-ACACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATTTCA 1455888 | | || | || | | ||||| | ||| | | ||| |||||||| |||| Sbjct 1416366 T-GTCGAAGGACCTGCACGACTGGAACAAGCGTCTC--AACGATGACGAGCGATTCTTCA 1416422 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 | ||| ||||| ||||| || |||||| || ||||| || ||||||||||| | Sbjct 1416423 TTTCGCATGTCCTTGCCTTCTT-CGCCGCATCAGACGGCATTGTCAACGAGAACCTGGTC 1416481 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || | ||||| ||| | || ||||| || | || ||||| ||||||||| Sbjct 1416482 GAGCGATTCAGTGGCGAGGTGCAAATACCCGAGGCTCGCTGCTTCTACGGCTTCCAGATC 1416541 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || |||||||| || || |||||||||||| ||| || Sbjct 1416542 ATGATGGAGAACATCCACTCCGAGACCTACTCACTACTCATCGACACCTACATCAGCGAA 1416601 Query 1456069 CCGGTCGAGAA-GGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || ||| || | || ||||||| ||| ||||||| | || | | | || | Sbjct 1416602 CC--TCGCCAACGCACATACCTCTTCAACGCTATCGACAACATCCCCTGCATCCGCAAGA 1416659 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 |||| ||||||| | |||||||||| | | || || ||||| ||| | | || || Sbjct 1416660 AGGCTAACTGGGCACTAAAGTGGATCAGCGACGA-CGCATCGAC-CTTCGGCTGCCGTCT 1416717 Query 1456187 CGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTG 1456245 ||| ||| || || || ||||| ||||| ||||| ||| ||| |||||||| || Sbjct 1416718 TATCGCCTTCGCAGCTGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCTGCCATCTTCTG 1416777 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||||||||||||||||| || Sbjct 1416778 GCTCAAGAAGCGCGGCCTCATGCCCGGCCT 1416807 Score = 156 bits (172), Expect = 6e-32 Identities = 232/324 (72%), Gaps = 4/324 (1%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||| ||||||||||| |||| || | ||| ||||||||| || |||| Sbjct 1416846 TGCACACCGACTTTGCCTGCATGCTGCACGCACATCTCCGCAACAAGCCATCACTCGACC 1416905 Query 1456512 TGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGC 1456571 | | | ||||||||| ||||||||||||||||||| ||||||| | || | | Sbjct 1416906 TCGTCCACCAGATCATCACCGAGGCCGTCGAGATCGAGCAAGAGTTCCTATCGGACGCCC 1416965 Query 1456572 TGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGT 1456631 |||| || || ||||||||||||||| |||||||||||||||||| | | ||||| Sbjct 1416966 TGCCCTGCGCACTTCTCGGCATGAACGCCA-AGCTCATGTGCCAGTACATCG-AGTTTGT 1417023 Query 1456632 CGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGT 1456691 ||| ||||| || ||| || |||||| | | ||| ||||| | ||||||| | Sbjct 1417024 CGCTGACCGTCTACTCCTCGCACTCGGCCACAG-CAAGTACTACAATGCCACCAACCCCT 1417082 Query 1456692 TCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-G 1456750 || | |||||| ||||| |||| |||||||| ||||| |||||| ||||| | Sbjct 1417083 TCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACAAACTTCTTCGAGAAGCGCGTAG 1417142 Query 1456751 GCGAGTACGCCAAGGCCGGCGTCA 1456774 | || ||| ||||| || |||| Sbjct 1417143 GTGACTACCAAAAGGCTGGTGTCA 1417166 >seq1 Length=1805414 Score = 210 bits (232), Expect = 3e-48 Identities = 361/510 (71%), Gaps = 18/510 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| | |||||| || ||||| ||||| || || ||||| || |||||| | || | Sbjct 289382 GATATGGCAGATGTAC-AAGAAGGCAGAGGCATCATTCTGGACAGCAGAGGAGATTGATC 289440 Query 1455835 TCGGCGCC-GACACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATTTCA 1455888 | | || || | | ||||| | ||| | | || |||||||| |||| Sbjct 289441 T-GTCGAAAGATCTGCACGACTGGAACAAGCGTCTC--AATGATGACGAGCGATTCTTCA 289497 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 | || || || ||||| || |||||| || |||||||| ||||||||||| | Sbjct 289498 TTTCACATGTGCTTGCCTTCTT-CGCCGCATCAGACGGCATCGTCAACGAGAACCTGGTC 289556 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || |||| ||||| ||| | || ||||| || | || ||||| ||||||||| Sbjct 289557 GAGCGATTTAGTGGCGAGGTGCAAATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATC 289616 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || || |||||||| || |||||||| || || |||||||||||| ||| || Sbjct 289617 ATGATGGAGAATATCCACTCCGAGACCTACTCACTACTTATCGACACCTACATCAGCGAA 289676 Query 1456069 CCGGTCGAGAA-GGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || ||| || | || |||||||| ||| ||||||| | |||| | | || | Sbjct 289677 CC--TCGCCAACGCACATACCTCTTTAACGCTATCGACAATATCCCGTGCATCCGCAAGA 289734 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 ||||| ||||||| | |||||||||| | | || || ||||| ||| | | || || Sbjct 289735 AGGCCAACTGGGCACTAAAGTGGATCAGCGACGA-CGCATCGAC-CTTCGGCTGCCGTCT 289792 Query 1456187 CGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTG 1456245 | ||| ||| || || ||||||||||| || ||||| || ||| ||| ||||| || Sbjct 289793 CATCGCCTTCGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATCTTCTG 289852 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||||| || |||||||| || Sbjct 289853 GCTCAAGAAGCGCGGGCTGATGCCCGGCCT 289882 Score = 140 bits (154), Expect = 5e-27 Identities = 231/326 (71%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||| ||||| |||||| |||| || | ||| ||||||||| || |||| Sbjct 289921 TGCACACCGACTTCGCCTGTATGCTGCACGCACATCTCCGCAACAAGCCATCACTCGACC 289980 Query 1456512 TGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTT--TGTCAGCGAGTC 1456569 | | | ||||||||| || || |||||||||||| ||||||| | ||| || | Sbjct 289981 TTGTCCACCAGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTTTCA--GACGC 290038 Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 || || || || ||||||||||||||| |||||||||||||||||| | | || Sbjct 290039 CCTACCCTGCGCACTTCTCGGCATGAACGCCA-AGCTCATGTGCCAGTACATCG-AGTTC 290096 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689 ||||| |||||||| ||| || |||||| | | ||| ||||| | ||||||| Sbjct 290097 GTCGCTGACCGCCTACTCCTCGCACTCGGCCACAG-CAAGTACTACAACGCCACCAACCC 290155 Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749 ||| | |||||| ||||| |||| |||||||| ||||| |||||| ||||| Sbjct 290156 CTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGT 290215 Query 1456750 -GGCGAGTACGCCAAGGCCGGCGTCA 1456774 || || ||| ||||| || |||| Sbjct 290216 AGGTGACTACCAGAAGGCTGGTGTCA 290241 >seq198 Length=398492 Score = 109 bits (120), Expect = 8e-18 Identities = 348/535 (65%), Gaps = 10/535 (2%) Strand=Plus/Plus Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCG-ACAGCATGGCCTGCGCAACTCGTTGCT 262937 ||||| ||||| || || |||| ||| ||| | ||||||| | |||||||| |||| Sbjct 355535 TGGGATTGGGAAGCCCTCAAGGCG-CGGATCGCAGTGCATGGCGTCCGCAACTCTCTGCT 355593 Query 262938 CGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGA 262997 ||| |||| |||||||| || | || ||||||||| |||| || ||| || || Sbjct 355594 CGTCGCGCCTATGCCCACAGCAAGCACATCGCAGATCATGGGGTTCAATGAGTGCTTTGA 355653 Query 262998 GGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAA 263057 | ||| |||||||||||| | || || || || | ||||| || || ||||| Sbjct 355654 GCCGTACACCAGCAACATCTACTCTCGTCGTGTCCTGGCCGGCGAGTTCCAAGTCGTCAA 355713 Query 263058 CCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGACCG 263117 || | ||| ||||| | | || | ||||| |||| | || | |||| Sbjct 355714 CCCCTGGCTGCTCAAGGACCTTGTCGACATGGGCCTCTGGAGCGACAACATGAAGAACCG 355773 Query 263118 GCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGATCT 263177 |||| || | ||||| | ||| || || | | | || ||| | Sbjct 355774 CATCATCGCAGATGGTGGCTCTATCCAGCGCATTCCC------AATATCCCCGACGAGAT 355827 Query 263178 CAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATGGCGGC 263237 ||||| || | ||||| || |||||| | | | || | ||| | ||| | || Sbjct 355828 CAAGGAGCTGTATAAGACTGTCTGGGAGATCAGCCAGCGCAACATCATCCAGATGTCAGC 355887 Query 263238 CGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCGAC 263297 ||| || | ||| |||| ||| ||| ||||| ||| | || | || ||||| Sbjct 355888 CGATCGTGGCGCCTTCATCGATCAGTCCCAATCGCTGAACATCCACATGAAGGAGCCGAC 355947 Query 263298 GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGCAT 263357 | | | |||||||| |||||| | | ||||||| || |||||||||||||| Sbjct 355948 GATGGGCAAGATCACGTCCATGCACTTCACCGGCTGGCGTCTAGGACTCAAGACTGGCAT 356007 Query 263358 GTACTATCTGCGCACCCGGCCCGCTGCCAACG-CCATTCAATTCACCGTCGATCA 263411 |||||| || |||||| | |||| || || |||| || ||||| |||||||| Sbjct 356008 GTACTACCTCCGCACCATGGCCGC-CTCAGCGCCCATCCAGTTCACTGTCGATCA 356061 Score = 102 bits (112), Expect = 1e-15 Identities = 131/177 (74%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 |||| |||| |||||| ||| ||| || | |||||| |||| || |||||| | |||| Sbjct 354960 AGATTTGGTATGCCATTCTCGAGGCTCAGACCGAGACTGGCAACCCGTACATGCTGTACA 355019 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAA 262209 | ||||| | ||||| | ||||||||| ||||| ||||||| | || ||| |||| Sbjct 355020 AAGACGCTGCCAACCGCAAGAGCAACCAGAAGAACTTGGGCACAATTCG-CAGCT-CCAA 355077 Query 262210 CCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCT 262266 | |||||||||||||| || ||| | | || ||| | | |||||||||||| Sbjct 355078 CTTGTGCACCGAGATCATCGAGTACACCGCTCCTGACGAAGTAGCTGTGTGCAACCT 355134 >seq176 Length=738521 Score = 96.9 bits (106), Expect = 5e-14 Identities = 108/141 (77%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 262094 ATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAG 262153 ||||||| |||||| | | ||| || | |||||| |||| || |||||| | || || Sbjct 358948 ATCTGGTATGCCATTCTTGAGGCTCAGACCGAGACTGGCAACCCGTACATGCTGTATAAA 359007 Query 262154 GACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAACC 262211 ||||||| ||||| | ||||||||| | ||| ||||||||| || ||| |||| | Sbjct 359008 GACGCCGCCAACCGCAAGAGCAACCAGAAAAACTTGGGCACCATTCG-CAGCT-CCAATC 359065 Query 262212 TGTGCACCGAGATCGTCCAGT 262232 |||||||||||||| || ||| Sbjct 359066 TGTGCACCGAGATCATCGAGT 359086 >seq206 Length=1270293 Score = 93.3 bits (102), Expect = 6e-13 Identities = 111/148 (75%), Gaps = 6/148 (4%) Strand=Plus/Minus Query 724998 GACATGATCGACCGCATCGGCACCGAGGCCGGTC---GCCTGGCGCGCTCCAACAAGCGC 725054 ||||| |||| ||| ||| || |||||| || || | ||| || ||||||| Sbjct 994764 GACATCTTCGAGCGCGTCGCAACAGAGGCC--TCCAAGCTCGCCGC-CTACAACAAGAAG 994708 Query 725055 AACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTG 725114 ||| ||| | ||||||| ||||||||| |||||||||| ||| | | ||| || || Sbjct 994707 TCCACCATCTCCTCGCGCGAAATCCAGACCTCCGTGCGCCTCATCCTCCCCGGTGAGCTC 994648 Query 725115 GCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| ||||||||| ||||||||||||| Sbjct 994647 GCCAAGCACGCCGTGTCCGAGGGCACCA 994620 >seq199 Length=371282 Score = 87.8 bits (96), Expect = 3e-11 Identities = 110/148 (74%), Gaps = 6/148 (4%) Strand=Plus/Minus Query 724998 GACATGATCGACCGCATCGGCACCGAGGCCGGTC---GCCTGGCGCGCTCCAACAAGCGC 725054 ||||| |||| ||| ||| || |||||| || || | ||| || ||||||| Sbjct 227826 GACATCTTCGAGCGCGTCGCAACAGAGGCC--TCCAAGCTCGCCGC-CTACAACAAGAAG 227770 Query 725055 AACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTG 725114 ||| ||| | ||||||| |||||||| |||||||||| ||| | | ||| || || Sbjct 227769 TCCACCATCTCCTCGCGCGAAATCCAGACTTCCGTGCGCCTCATCCTTCCCGGTGAGCTC 227710 Query 725115 GCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| ||||||||| ||||||||||||| Sbjct 227709 GCCAAGCACGCCGTGTCCGAGGGCACCA 227682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177785447359254