Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 125 1e-23 >seq1 Length=1805414 Score = 125 bits (138), Expect = 1e-23 Identities = 367/559 (66%), Gaps = 10/559 (2%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||||||||| || | |||||| || | ||| | ||||| || || ||||| Sbjct 289939 CAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAAATGAGCTCGTTGGAGAAGGTGAGG 289880 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || ||||| || || ||||| |||||||| || || || || || || ||||| ||||| Sbjct 289879 CCGGGCATCAGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCGAACGAACCAGAGAAGAAA 289820 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT---TGTATCATTATGT 39793 ||||| || || ||||| || || | || | ||| | | || || | Sbjct 289819 ATGCCCTCGACAGCTGCGAAGGCGATGAGACGGCAGCCGAAGGTCGATGCGTCGTCGCTG 289760 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 |||||||| ||||||| | || ||||| | || || || | || ||||| ||| Sbjct 289759 ATCCACTTTAGTGCCCAGTTGGCCTTCTTGCGGATGCACGGGATATTGTCGATAGCGTTA 289700 Query 39854 AAGAGATAATGTTTTTCATC-ACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||||| || ||| | | | || | | || || || || | || || | Sbjct 289699 AAGAGGTA-TGTGCGTTGGCGAGGTTCGCTGATGTAGGTGTCGATAAGTAGTGAGTAGGT 289641 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || ||||| || || ||| ||||| || ||||| || || | || |||| || Sbjct 289640 CTCGGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCAGGGAT 289581 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 ||| ||||| || ||||| || ||| || || || || || || || ||||| Sbjct 289580 TTGCACCTCGCCACTAAATCGCTCGACCAGGTTCTCGTTGACGATGCCGTCTGATGCGGC 289521 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATAT---TTTTCATCGGGTGTCAAT-TTATTCC 40088 || || || | |||||| ||| || || | ||||| || | || |||| Sbjct 289520 GAAGAAGGCAAGCACATGTGAAATGAAGAATCGCTCGTCATCAT-TGAGACGCTTGTTCC 289462 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| | | |||||| || | ||| | || || |||||||| || || |||||||||| Sbjct 289461 AGTCGTGCAGATCTTTCGACAGATCAATCTCCTCTGCTGTCCAGAATGATGCCTCTGCCT 289402 Query 40149 TTTTGTACATGTTCCATAT 40167 | |||||||| | |||||| Sbjct 289401 TCTTGTACATCTGCCATAT 289383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906507441880