Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq198 154 2e-32 seq112 122 1e-22 seq188 86.0 8e-12 >seq198 Length=398492 Score = 154 bits (170), Expect = 2e-32 Identities = 550/850 (65%), Gaps = 16/850 (2%) Strand=Plus/Minus Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 ||||| | ||||| ||||| || || | | |||||||| | || || || || Sbjct 355140 GATGCAAGGTTGCACACAGCTACTTCGTCAGGAGCGGTGTACTCGATGATCTCGGTGCAC 355081 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 |||||||| || ||| || ||||| ||||| ||||| ||||| |||| || || Sbjct 355080 AAGTTGGAGCTGCGAATTGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCT 355021 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-C 111420 ||||| |||||||| || | || ||||| ||||| | | |||||| || | ||||| | Sbjct 355020 TTGTACAGCATGTACGGGTTGCCAGTCTCGGTCTGAGCCTCGAGAATGGCATACCAAATC 354961 Query 111421 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCT-CGTACTTTGTGTAGAGGG 111479 || | ||| | | | | | ||| | ||| ||| | ||||| ||||||||| | Sbjct 354960 TTCTG-GGCGCGCATAGTCTCA----CCCTTGCCTTCGCTTTCGTACCGTGTGTAGAGCG 354906 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539 |||| ||||| || || | | |||| || || || || || || || | || | Sbjct 354905 CTTCGAACTCATCCCCGTACACATCGGCAAGGCCGGGGCACTCGTTCGGGCACATCAGTG 354846 Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 ||| | | | || | || ||||||||||| || || || |||||||| | | | Sbjct 354845 TCCAATCAGCGTTATCTTGCACACGCTTCATGAAGAGATCAGGGATCCACAGAGCGTAGA 354786 Query 111600 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 111659 | | || | | || |||| || | || ||||| || | |||||||| || Sbjct 354785 ACAAGTCACGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGGACA 354726 Query 111660 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAG 111716 ||| || |||||||| ||||| || |||| |||| | || ||| ||| Sbjct 354725 AGATGTCTGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCGGGTCGCTTGTTGCCAC 354666 Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 | || | ||||| | || ||| ||| || || || ||||| || | | ||| | || Sbjct 354665 CCTGGTCGACATACCTAGCAGTGTTGTTGAACACCCGTAGCATGGGTACGAGACCGTTTG 354606 Query 111777 ATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATGGATGTGCAT 111834 || |||||||| ||| || |||||| | | || | | ||| || | Sbjct 354605 ATGTGCCATTTGTACCCGCAATGTACGAG--CCAGTCGCCCGAATGCGATGTGCGTTGAG 354548 Query 111835 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 111894 || || || || || || ||||| |||||| | | || || | || || || Sbjct 354547 TCCGATGCCACCGGCGTTTTTCGAGATCATCGCACAAGTCTTCAGCGTGTCGTAAATGCC 354488 Query 111895 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 111954 | || ||| ||||| || |||| |||||||| | | || | | ||||| Sbjct 354487 CTCAATGCTGTCGTCCTTCATGTCGATCAGGAAGCATGAAGCAAGTTGTGCTTGAGGTGT 354428 Query 111955 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGT 112013 ||||| |||| || || || | || || |||| |||| | | |||||| | || || Sbjct 354427 GCCAGCGCTGAACAGCGTCGGCGAAGCATGTGTGAA-ATACTTGTTGGACATGTAGTTGT 354369 Query 112014 ATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACA 112073 | ||||| | | | ||||||||| || ||||| || || | ||||| ||||||| || Sbjct 354368 ACGTCTCGATCGCCGCATCAATGTCCTCGCCGTGTATACCTACAGCGACACGCATGATCA 354309 Query 112074 TGTACTGTGG 112083 ||| |||||| Sbjct 354308 TGTGCTGTGG 354299 >seq112 Length=1778705 Score = 122 bits (134), Expect = 1e-22 Identities = 336/502 (67%), Gaps = 16/502 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| || || |||||||| |||||||| ||||| || | ||| ||||| ||||| Sbjct 1417149 TAGTCACCTACGCGCTTCTCGAAGAAGTTTGTCTTGCCGGCGAGGGAGATGTTCTCCATG 1417090 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCA--AATGG--GTGGCACCCCAACTTGTTTGAGGAG 122486 ||||| || || || | || || | | | | ||||| | | | ||| || Sbjct 1417089 AAGTCGAAGGGGTTGGTGGCATTGTAGTACTTGCTGTGGC----CGAGTGCGAGGAGTAG 1417034 Query 122487 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT 122546 ||| || | ||| |||| ||||||| | |||| || | |||||| |||| || Sbjct 1417033 ACGGTCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGC 1416974 Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 || || || |||||| | | |||| ||| ||| ||||| || ||||| | | ||| Sbjct 1416973 GCAGGGCAGGGCGTCCGATAGGAACTCTTGCTCGATCTCGACGGCCTCGGTGATGATCTG 1416914 Query 122607 GTGGATAGTTTCG-GTAGTGGGTCTATTACGCAAA-GT-CTTGAAGAGCTCCACGGCAAA 122663 ||||| ||| || ||| | | || || | | || | || || | || |||||| Sbjct 1416913 GTGGACGAGGTCGAGTGATGGCT-TGTTGCGGAGATGTGCGTGCAGCA-TGCA-GGCAAA 1416857 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 || ||| | ||||| || || || || || ||||| ||||| || || ||||| Sbjct 1416856 GTCGGTGTGCATGCCCTCGTCACGCGAGATGAGCTCATTAGAGAACGTGAGGCCGGGCAT 1416797 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 ||| || |||||||| | ||| | || || ||| || |||||||||||||||||||| Sbjct 1416796 GAGGCCGCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGAGCCGGAGAAGAAGATACCCTC 1416737 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATT 122842 ||| || || || | ||| || | |||||| ||| | | | | | ||| | Sbjct 1416736 AACAGCTGCGAAGGCGATAAGACGGCAGCCGAAGG-TCGATGCGTCGTCGCTGATCCACT 1416678 Query 122843 TCATTGCCCATTTCGCCTTCTT 122864 | | |||||| || |||||||| Sbjct 1416677 TTAGTGCCCAGTTAGCCTTCTT 1416656 >seq188 Length=510084 Score = 86.0 bits (94), Expect = 8e-12 Identities = 187/273 (68%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATG--GTTGATTTTCGCGGGCGATTTCAAAGA 11687 ||||| |||||||||||||||| || |||| || || ||| || || | | || | Sbjct 119333 GCATCGATCTCATCAATGAAGATGATGCATGGTGTCGACTTT--CGTGCATTGGCGAACA 119276 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747 | || || || | | ||| |||||||||||||||||||| || | | | || | Sbjct 119275 GGTCTCGCACACGGGAAGGACCGACACCAACAAACATCTCCACGAATTCGGACCCTGA-C 119217 Query 11748 AC-TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 || || ||| || ||| |||||||| || ||||| ||||| | ||||| || Sbjct 119216 ACGCTGAAGAAGGGCACACCAGATTCACCGGCCGTGGCTTTTGCGAGCAACGTCTTACCA 119157 Query 11807 GTACCTGGCTTACCCGC-GAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATA 11865 ||||| || | |||| |||| |||||||| || ||||| || ||| | | | Sbjct 119156 GTACCAGG-TGGTCCGCTCAGAATCGCGCCTCGTGGAATCTTCGCGCCAAGTTTAGTGAA 119098 Query 11866 TCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 ||||||||||||| | || | ||||| ||| Sbjct 119097 GATCTCGGGTTGCTTCAAGAATTGCACAAACTC 119065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029903943200