Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq198 154 2e-32
seq112 122 1e-22
seq188 86.0 8e-12
>seq198
Length=398492
Score = 154 bits (170), Expect = 2e-32
Identities = 550/850 (65%), Gaps = 16/850 (2%)
Strand=Plus/Minus
Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301
||||| | ||||| ||||| || || | | |||||||| | || || || ||
Sbjct 355140 GATGCAAGGTTGCACACAGCTACTTCGTCAGGAGCGGTGTACTCGATGATCTCGGTGCAC 355081
Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361
|||||||| || ||| || ||||| ||||| ||||| ||||| |||| || ||
Sbjct 355080 AAGTTGGAGCTGCGAATTGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCT 355021
Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-C 111420
||||| |||||||| || | || ||||| ||||| | | |||||| || | ||||| |
Sbjct 355020 TTGTACAGCATGTACGGGTTGCCAGTCTCGGTCTGAGCCTCGAGAATGGCATACCAAATC 354961
Query 111421 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCT-CGTACTTTGTGTAGAGGG 111479
|| | ||| | | | | | ||| | ||| ||| | ||||| ||||||||| |
Sbjct 354960 TTCTG-GGCGCGCATAGTCTCA----CCCTTGCCTTCGCTTTCGTACCGTGTGTAGAGCG 354906
Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539
|||| ||||| || || | | |||| || || || || || || || | || |
Sbjct 354905 CTTCGAACTCATCCCCGTACACATCGGCAAGGCCGGGGCACTCGTTCGGGCACATCAGTG 354846
Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599
||| | | | || | || ||||||||||| || || || |||||||| | | |
Sbjct 354845 TCCAATCAGCGTTATCTTGCACACGCTTCATGAAGAGATCAGGGATCCACAGAGCGTAGA 354786
Query 111600 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 111659
| | || | | || |||| || | || ||||| || | |||||||| ||
Sbjct 354785 ACAAGTCACGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGGACA 354726
Query 111660 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAG 111716
||| || |||||||| ||||| || |||| |||| | || ||| |||
Sbjct 354725 AGATGTCTGCGTGCCACGGCTCGAGGTAGATGGCGAATGCGCCGGGTCGCTTGTTGCCAC 354666
Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776
| || | ||||| | || ||| ||| || || || ||||| || | | ||| | ||
Sbjct 354665 CCTGGTCGACATACCTAGCAGTGTTGTTGAACACCCGTAGCATGGGTACGAGACCGTTTG 354606
Query 111777 ATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATGGATGTGCAT 111834
|| |||||||| ||| || |||||| | | || | | ||| || |
Sbjct 354605 ATGTGCCATTTGTACCCGCAATGTACGAG--CCAGTCGCCCGAATGCGATGTGCGTTGAG 354548
Query 111835 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 111894
|| || || || || || ||||| |||||| | | || || | || || ||
Sbjct 354547 TCCGATGCCACCGGCGTTTTTCGAGATCATCGCACAAGTCTTCAGCGTGTCGTAAATGCC 354488
Query 111895 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 111954
| || ||| ||||| || |||| |||||||| | | || | | |||||
Sbjct 354487 CTCAATGCTGTCGTCCTTCATGTCGATCAGGAAGCATGAAGCAAGTTGTGCTTGAGGTGT 354428
Query 111955 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGT 112013
||||| |||| || || || | || || |||| |||| | | |||||| | || ||
Sbjct 354427 GCCAGCGCTGAACAGCGTCGGCGAAGCATGTGTGAA-ATACTTGTTGGACATGTAGTTGT 354369
Query 112014 ATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACA 112073
| ||||| | | | ||||||||| || ||||| || || | ||||| ||||||| ||
Sbjct 354368 ACGTCTCGATCGCCGCATCAATGTCCTCGCCGTGTATACCTACAGCGACACGCATGATCA 354309
Query 112074 TGTACTGTGG 112083
||| ||||||
Sbjct 354308 TGTGCTGTGG 354299
>seq112
Length=1778705
Score = 122 bits (134), Expect = 1e-22
Identities = 336/502 (67%), Gaps = 16/502 (3%)
Strand=Plus/Minus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| || || |||||||| |||||||| ||||| || | ||| ||||| |||||
Sbjct 1417149 TAGTCACCTACGCGCTTCTCGAAGAAGTTTGTCTTGCCGGCGAGGGAGATGTTCTCCATG 1417090
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCA--AATGG--GTGGCACCCCAACTTGTTTGAGGAG 122486
||||| || || || | || || | | | | ||||| | | | ||| ||
Sbjct 1417089 AAGTCGAAGGGGTTGGTGGCATTGTAGTACTTGCTGTGGC----CGAGTGCGAGGAGTAG 1417034
Query 122487 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT 122546
||| || | ||| |||| ||||||| | |||| || | |||||| |||| ||
Sbjct 1417033 ACGGTCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGC 1416974
Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606
|| || || |||||| | | |||| ||| ||| ||||| || ||||| | | |||
Sbjct 1416973 GCAGGGCAGGGCGTCCGATAGGAACTCTTGCTCGATCTCGACGGCCTCGGTGATGATCTG 1416914
Query 122607 GTGGATAGTTTCG-GTAGTGGGTCTATTACGCAAA-GT-CTTGAAGAGCTCCACGGCAAA 122663
||||| ||| || ||| | | || || | | || | || || | || ||||||
Sbjct 1416913 GTGGACGAGGTCGAGTGATGGCT-TGTTGCGGAGATGTGCGTGCAGCA-TGCA-GGCAAA 1416857
Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723
|| ||| | ||||| || || || || || ||||| ||||| || || |||||
Sbjct 1416856 GTCGGTGTGCATGCCCTCGTCACGCGAGATGAGCTCATTAGAGAACGTGAGGCCGGGCAT 1416797
Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783
||| || |||||||| | ||| | || || ||| || ||||||||||||||||||||
Sbjct 1416796 GAGGCCGCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGAGCCGGAGAAGAAGATACCCTC 1416737
Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATT 122842
||| || || || | ||| || | |||||| ||| | | | | | ||| |
Sbjct 1416736 AACAGCTGCGAAGGCGATAAGACGGCAGCCGAAGG-TCGATGCGTCGTCGCTGATCCACT 1416678
Query 122843 TCATTGCCCATTTCGCCTTCTT 122864
| | |||||| || ||||||||
Sbjct 1416677 TTAGTGCCCAGTTAGCCTTCTT 1416656
>seq188
Length=510084
Score = 86.0 bits (94), Expect = 8e-12
Identities = 187/273 (68%), Gaps = 8/273 (3%)
Strand=Plus/Minus
Query 11630 GCATCAATCTCATCAATGAAGACAATACATG--GTTGATTTTCGCGGGCGATTTCAAAGA 11687
||||| |||||||||||||||| || |||| || || ||| || || | | || |
Sbjct 119333 GCATCGATCTCATCAATGAAGATGATGCATGGTGTCGACTTT--CGTGCATTGGCGAACA 119276
Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747
| || || || | | ||| |||||||||||||||||||| || | | | || |
Sbjct 119275 GGTCTCGCACACGGGAAGGACCGACACCAACAAACATCTCCACGAATTCGGACCCTGA-C 119217
Query 11748 AC-TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806
|| || ||| || ||| |||||||| || ||||| ||||| | ||||| ||
Sbjct 119216 ACGCTGAAGAAGGGCACACCAGATTCACCGGCCGTGGCTTTTGCGAGCAACGTCTTACCA 119157
Query 11807 GTACCTGGCTTACCCGC-GAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATA 11865
||||| || | |||| |||| |||||||| || ||||| || ||| | | |
Sbjct 119156 GTACCAGG-TGGTCCGCTCAGAATCGCGCCTCGTGGAATCTTCGCGCCAAGTTTAGTGAA 119098
Query 11866 TCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898
||||||||||||| | || | ||||| |||
Sbjct 119097 GATCTCGGGTTGCTTCAAGAATTGCACAAACTC 119065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628029903943200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |