Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq198 163 4e-35 seq112 145 9e-30 seq1 134 2e-26 >seq198 Length=398492 Score = 163 bits (180), Expect = 4e-35 Identities = 572/876 (65%), Gaps = 38/876 (4%) Strand=Plus/Minus Query 118694 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 118753 ||| || |||| || || | || || || || ||||||| || || | | || Sbjct 355162 GACGTATGTAGGCAGAGCCAGAGATGCAAGGTTGCACACAGCTACTTCGTCAGGAGCGGT 355103 Query 118754 GTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 118813 |||||| || || || ||||||||||| || || ||| |||||||||||||| || || Sbjct 355102 GTACTCGATGATCTCGGTGCACAAGTTGGAGCTGCGAATTGTGCCCAAGTTCTTCTGGTT 355043 Query 118814 TGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 118873 ||| ||| || || ||||| |||||||| || | || ||||| || || | Sbjct 355042 GCTCTTGCGGTTGGCAGCGTCTTTGTACAGCATGTACGGGTTGCCAGTCTCGGTCTGAGC 354983 Query 118874 CTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCT--CT 118931 || |||||| || | ||| | || | | ||| | || | | ||| ||| | || Sbjct 354982 CTCGAGAATGGCATACCAAA--TCTTCTG--GGCGC----GCATAGTCTCACCCTTGCCT 354931 Query 118932 TCC---TCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 118988 || |||||| ||||||||| ||||| ||||| || || | || | || || Sbjct 354930 TCGCTTTCGTACCGTGTGTAGAGCGCTTCGAACTCATCCCCGTACACATCGGCAAGGCCG 354871 Query 118989 GGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048 || || | ||||| | || | ||| | | | || | || |||||||||||| Sbjct 354870 GGGCACTCGTTCGGGCACATCAGTGTCCAATCAGCGTTATCTTGCACACGCTTCATGAAG 354811 Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 119108 || || |||||||| || || |||| | || ||| ||| | || || | || || Sbjct 354810 AGATCAGGGATCCACAGAGCGTAGAACAAGTCACGAGCGCGGACCTCCTCCTTGCCGTGG 354751 Query 119109 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 119168 || |||| || | ||| || ||| || ||||||||||| || ||||| | ||| Sbjct 354750 TTCTTGCGCAGGTCAAGGAAGGACAAGATGTCTGCGTGCCACGGCTCGAGGTAGATGGCG 354691 Query 119169 ATTGACCC------CTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 | || || ||| | | ||| |||||| |||||||| |||||| ||| || Sbjct 354690 AATGCGCCGGGTCGCTT--GTTG-CCACCCTGGTCGACATACCTAGCAGTGTTGTTGAAC 354634 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACT 119280 || || ||||| || | || ||| | ||| ||||||||| ||| || |||||| | Sbjct 354633 ACCCGTAGCATGGGTACGAGACCGTTTGATGTGCCATTTGTACCCGCAATGTACGAGCC- 354575 Query 119281 TATTGGCTCTGACATCGTGGATGTGC----ATACCAATACCCCCTGCCCACTTTGAGATT 119336 | | || | || || ||||||| | || || || || || || ||||| Sbjct 354574 -AGTCGC-CCGA-AT--GCGATGTGCGTTGAGTCCGATGCCACCGGCGTTTTTCGAGATC 354520 Query 119337 TGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATG 119396 ||| || | | || || |||| || || || || ||| |||| | |||| Sbjct 354519 ATCGCACAAGTCTTCAGCGTGTCGTAAATGCCCTCAATGCTGTCGTCCTTCATGTCGATC 354460 Query 119397 AGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGC 119455 |||||||| | | ||| || || ||||| |||||| |||| || || || | || Sbjct 354459 AGGAAGCATGAAGCAAGTTG-TGCTTGAGGTGTGCCAGCGCTGAACAGCGTCGGCGAAGC 354401 Query 119456 GTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTT 119514 || |||| |||| | | |||||| | || ||| ||||| | | || |||||| | Sbjct 354400 ATGTGTGAA-ATACTTGTTGGACATGTAGTTGTACGTCTCGATCGCCGCATCAATGTCCT 354342 Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACATGT 119550 | ||||| ||||| | | ||| ||||| | ||||| Sbjct 354341 CGCCGTGTATACCTACAGCGACACGCATGATCATGT 354306 >seq112 Length=1778705 Score = 145 bits (160), Expect = 9e-30 Identities = 534/815 (66%), Gaps = 21/815 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||||||||| ||| | | | ||| |||||||| Sbjct 1417149 TAGTCACCTACGCGCTTCTCGAAGAAGTTTGTCTTGCCGGCGAGGGAGATGTTCTCCATG 1417090 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || || || ||||| | | || | | |||||| | | | | | ||| |||| Sbjct 1417089 AAGTCGAAGGGGTTGGTGGCATTGTAGTACTTGCTGTGGC-CGAGTGCGAG-GAGTAGAC 1417032 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | ||| |||| ||||||| |||| || || |||||| |||| || | Sbjct 1417031 GGTCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGCGC 1416972 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || || |||||| | | |||| | | ||| || || || || || | ||| || Sbjct 1416971 AGGGCAGGGCGTCCGATAGGAACTCTTGCTCGATCTCGACGGCCTCGGTGATGATCTGGT 1416912 Query 129966 GAATGGTCTCC-GTGCCAGGTCTATTGCGCAAA-GT-CTTGAAGAGTTCCACGGCAAACT 130022 | | | || ||| | | | ||||| | | || | || || | | |||||| | Sbjct 1416911 GGACGAGGTCGAGTGATGGCT-TGTTGCGGAGATGTGCGTGCAGCATGCA--GGCAAAGT 1416855 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| | ||||||||||| |||||||| ||||| ||||| || || ||||||| Sbjct 1416854 CGGTGTGCATGCCCTCGTCACGCGAGATGAGCTCATTAGAGAACGTGAGGCCGGGCATGA 1416795 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 | || |||||||| | |||||| || ||| || ||||| ||||||||||| ||||| | Sbjct 1416794 GGCCGCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGAGCCGGAGAAGAAGATACCCTCAA 1416735 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC-AAACCACTTC 130201 || ||||| || | ||||| |||| | | || | | || | | |||||| Sbjct 1416734 CAGCTGCGAAGGCGATAAGACG-GCAGCCGAAGGTCGATGCGTCGTCGCTGATCCACTTT 1416676 Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA-GTTC 130260 | ||||| | ||||| || ||| || |||| | | | ||| || | |||| || Sbjct 1416675 AGTGCCCAGTTAGCCTTCTTGCGGATGCAGGGGATGTTGTCGATAGCGTTGAAGAGGTAT 1416616 Query 130261 CTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATG 130320 | | || || || || ||||||| | || |||||| ||| || || ||| || Sbjct 1416615 GTGCGTTGGCGA-GGTTCGCTGATGTAGGTGTCGATGAGTAGTGAGTAGGTCTCGGAGTG 1416557 Query 130321 GACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCT 130379 || | | ||| || | ||| | ||||||| |||| || ||| ||| || |||| Sbjct 1416556 GATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGTATTTGCACCT 1416498 Query 130380 CATCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAAC 130438 | | | ||| | | | ||||| ||||| || || || | || || || Sbjct 1416497 C-GCCACTGAATCGCTCGACCAGGTTCTCGTTGACAATGCCGTCTGATGCGGCGAAGAAG 1416439 Query 130439 GCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCA 130495 || |||| || | ||||| | || | ||||| | | | |||||||||| Sbjct 1416438 GCAAGGACATGCGAAATGAAGAATCGCTCGTCATCGTTGAGACGCTTGTTCCAGTCGTGC 1416379 Query 130496 AGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 || |||||||| ||||| | |||||| || ||||| Sbjct 1416378 AGGTCCTTCGACAGATCGATCTCCTCTGCTGTCCA 1416344 >seq1 Length=1805414 Score = 134 bits (148), Expect = 2e-26 Identities = 302/443 (68%), Gaps = 12/443 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| ||| | | | ||| |||||||| Sbjct 290224 TAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCATG 290165 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || || || ||||| | | ||| | | |||||| | | | | | ||| || | Sbjct 290164 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCTGTGGC-CGAGTGCGAG-GAGTAGGC 290107 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | |||| |||| ||||||| |||| || || |||||| |||| || | Sbjct 290106 GGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGCGC 290047 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || || ||||| | | |||| | | ||| || || ||||||||| | ||| || Sbjct 290046 AGGGTAGGGCGTCTGAAAGGAACTCTTGCTCGATCTCGACAGCTTCCGTGATGATCTGGT 289987 Query 129966 GAAT--GGTCTCCGTGCCAGGTCTATTGCGCAAA-GT-CTTGAAGAGTTCCACGGCAAAC 130021 | | |||| ||| | | | ||||| | | || | || || | | ||| || Sbjct 289986 GGACAAGGTCGA-GTGATGGCT-TGTTGCGGAGATGTGCGTGCAGCATACA--GGCGAAG 289931 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| | |||||||||||||| ||||| || || |||||| || || ||||| Sbjct 289930 TCGGTGTGCATGCCCTCGTCACGGGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATC 289871 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || |||||||| | |||||| || || || || ||||||||||| || ||||| Sbjct 289870 AGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCGAACGAACCAGAGAAGAAAATGCCCTCG 289811 Query 130142 ACACACGCGAACGCAAAGAGACG 130164 ||| ||||| || | |||||| Sbjct 289810 ACAGCTGCGAAGGCGATGAGACG 289788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433135972520