Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq202 102 2e-16 seq184 102 2e-16 seq228 98.7 3e-15 >seq202 Length=334784 Score = 102 bits (112), Expect = 2e-16 Identities = 237/357 (66%), Gaps = 3/357 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || | || | |||||||| | |||||||||||| | ||||| ||| | Sbjct 103806 CCCGAGGAGGTCTCCGCCATGGTTTTGGGCAAAATGAAGGAAGTCGCTGAGCAATACCTC 103865 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || || | || || | || || | ||||| || ||||| || ||||| || ||||| Sbjct 103866 GGCGAGAAGGTCACGAACGCAGTCGTCACTGTCCCGGCCTACTTCAATGACGCTCAGCGC 103925 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 |||| || || ||||| |||| || || || | ||||| || | | |||| || Sbjct 103926 GCTGCCACCAAGGATGCAGGCACAATCGCCGGTCTCAATGTCCTTCGTGTTGTTAACGAG 103985 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || | || ||||| || || || || ||||| || | ||| Sbjct 103986 CCCACCGCGGCCGCTCTCGCCTATGGCCTCGACAA---GACCGACCAGGAGCGCCAGATT 104042 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 | | | ||| | ||||| || || || ||||| || | | || | || |||| Sbjct 104043 ATCGTCTACGATCTCGGTGGAGGAACCTTCGATGTTTCCATCTTGACTGTCGATCAGGGT 104102 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 | || || || | || || || ||||| || ||||| ||||| || ||||| ||| Sbjct 104103 GTATTCGAGGTCCAGGCCACCGCCGGTGACACCCATCTCGGTGGCGAGGATTTCGAT 104159 >seq184 Length=1511567 Score = 102 bits (112), Expect = 2e-16 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || |||||||| || |||||||| || || || || || Sbjct 735925 CATACCACCACGCAGACGGAGGACGAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTC 735984 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || || || ||||| | || ||||| || || Sbjct 735985 GGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGG 736044 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || || || || || ||| || ||||| || || | || || | Sbjct 736045 AGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACATTGTCGATGGTGTCGGAGCTCT 736103 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 | || ||||| || | ||||| ||||| | ||||| || || Sbjct 736104 CCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTTTTGACGAA 736146 Score = 91.5 bits (100), Expect = 4e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| || ||||| | | ||| || | || || || ||||| || || || || | Sbjct 735465 TTTACTGCCCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGT 735524 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || | || || || | || || || || ||||| ||||| ||||| | Sbjct 735525 AGTCGCTCAAAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATGAGACGCTGCTGGT 735584 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || ||||||||||| || | || || || || |||| || |||| Sbjct 735585 CTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATG 735644 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || || | ||||| || || || || || || ||||| ||||| Sbjct 735645 ATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 735699 >seq228 Length=1254254 Score = 98.7 bits (108), Expect = 3e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 || ||||| || | || || | || || || ||||| || ||||| || || || Sbjct 555558 CCTCCACGCAAACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 555617 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || || || || || | || || ||||| ||||| ||||| |||||||| || || Sbjct 555618 AACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGG 555677 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || ||||||||||| || | || || || || || | || |||| ||| || Sbjct 555678 ATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGATTCCACC 555737 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || || || || ||||| Sbjct 555738 TCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784 Score = 93.3 bits (102), Expect = 1e-13 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| || || ||||| || || || || ||||| Sbjct 556010 CATACCACCACGCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATC 556069 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || || || ||||| | || ||||| || || Sbjct 556070 GGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGG 556129 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 || || || ||||| || || || || ||| || ||||| || || | || || | Sbjct 556130 CGGGATGCCCTCTTTGTCTTGGATCTT-GCTCTTGACATTGTCGATGGTGTCGGAGCTCT 556188 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 | || ||||| || | ||||| ||||| | || ||||| || Sbjct 556189 CCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTTACGAA 556231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515249216409401