Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq202 102 2e-16
seq184 102 2e-16
seq228 98.7 3e-15
>seq202
Length=334784
Score = 102 bits (112), Expect = 2e-16
Identities = 237/357 (66%), Gaps = 3/357 (1%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
||||| || | || | |||||||| | |||||||||||| | ||||| ||| |
Sbjct 103806 CCCGAGGAGGTCTCCGCCATGGTTTTGGGCAAAATGAAGGAAGTCGCTGAGCAATACCTC 103865
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|| || | || || | || || | ||||| || ||||| || ||||| || |||||
Sbjct 103866 GGCGAGAAGGTCACGAACGCAGTCGTCACTGTCCCGGCCTACTTCAATGACGCTCAGCGC 103925
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|||| || || ||||| |||| || || || | ||||| || | | |||| ||
Sbjct 103926 GCTGCCACCAAGGATGCAGGCACAATCGCCGGTCTCAATGTCCTTCGTGTTGTTAACGAG 103985
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
||||| || || || | || ||||| || || || || ||||| || | |||
Sbjct 103986 CCCACCGCGGCCGCTCTCGCCTATGGCCTCGACAA---GACCGACCAGGAGCGCCAGATT 104042
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
| | | ||| | ||||| || || || ||||| || | | || | || ||||
Sbjct 104043 ATCGTCTACGATCTCGGTGGAGGAACCTTCGATGTTTCCATCTTGACTGTCGATCAGGGT 104102
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888
| || || || | || || || ||||| || ||||| ||||| || ||||| |||
Sbjct 104103 GTATTCGAGGTCCAGGCCACCGCCGGTGACACCCATCTCGGTGGCGAGGATTTCGAT 104159
>seq184
Length=1511567
Score = 102 bits (112), Expect = 2e-16
Identities = 158/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || |||||||| || |||||||| || || || || ||
Sbjct 735925 CATACCACCACGCAGACGGAGGACGAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTC 735984
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| || || || || || || ||||| | || ||||| || ||
Sbjct 735985 GGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGG 736044
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685
|||||| || || || || || || || ||| || ||||| || || | || || |
Sbjct 736045 AGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACATTGTCGATGGTGTCGGAGCTCT 736103
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728
| || ||||| || | ||||| ||||| | ||||| || ||
Sbjct 736104 CCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTTTTGACGAA 736146
Score = 91.5 bits (100), Expect = 4e-13
Identities = 161/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||||| || ||||| | | ||| || | || || || ||||| || || || || |
Sbjct 735465 TTTACTGCCCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGT 735524
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || || | || || || | || || || || ||||| ||||| ||||| |
Sbjct 735525 AGTCGCTCAAAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATGAGACGCTGCTGGT 735584
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || ||||||||||| || | || || || || |||| || ||||
Sbjct 735585 CTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATG 735644
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || || || || | ||||| || || || || || || ||||| |||||
Sbjct 735645 ATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 735699
>seq228
Length=1254254
Score = 98.7 bits (108), Expect = 3e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|| ||||| || | || || | || || || ||||| || ||||| || || ||
Sbjct 555558 CCTCCACGCAAACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 555617
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
|| || || || || || | || || ||||| ||||| ||||| |||||||| || ||
Sbjct 555618 AACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGG 555677
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
|| || || ||||||||||| || | || || || || || | || |||| ||| ||
Sbjct 555678 ATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGATTCCACC 555737
Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || | ||||| || || || || || || || || |||||
Sbjct 555738 TCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784
Score = 93.3 bits (102), Expect = 1e-13
Identities = 156/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || ||||| || || ||||| || || || || |||||
Sbjct 556010 CATACCACCACGCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATC 556069
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| || || || || || || ||||| | || ||||| || ||
Sbjct 556070 GGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGG 556129
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685
|| || || ||||| || || || || ||| || ||||| || || | || || |
Sbjct 556130 CGGGATGCCCTCTTTGTCTTGGATCTT-GCTCTTGACATTGTCGATGGTGTCGGAGCTCT 556188
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728
| || ||||| || | ||||| ||||| | || ||||| ||
Sbjct 556189 CCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTTACGAA 556231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515249216409401
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |