Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq198 223 4e-53 seq176 203 4e-47 seq250 120 3e-22 seq68 100 3e-16 >seq198 Length=398492 Score = 223 bits (246), Expect = 4e-53 Identities = 422/612 (69%), Gaps = 8/612 (1%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACAC 53232 |||| ||| ||| | | ||||||| ||||| | ||||| ||||| || ||| | | Sbjct 354293 GAGAGGCCACAGCACATGATCATGCGTGTCGCTGTAGGTATACACGGCGAGGACATTGAT 354352 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 ||| | ||||||||| ||| ||| | | ||||| || || || || |||| || Sbjct 354353 GCG-GCGATCGAGACGTACAACTACATGTCCAACAAGTATTTCACACATGCTTCGCCGAC 354411 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 ||||||| |||||| || ||| | || | | ||||||||| | | ||||| Sbjct 354412 GCTGTTCAGCGCTGGCACACCTCAAGCACAACTTGCTTCATGCTTCCTGATCGACATGAA 354471 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| ||| || || ||||| ||||| ||||| ||| ||||| ||||| || Sbjct 354472 GGACGACAGCATTGAGGGCATTTACGACACGCTGAAGACTTGTGCGATGATCTCGAAAAA 354531 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAG 53470 | ||||| ||||| || || || | | || | || |||| ||| | || | Sbjct 354532 CGCCGGTGGCATCGGACTCAAC-GCAC-ATCGCATTCGGGCGACTGGCTCGTACATTGCG 354589 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || || ||| | | || |||| || ||||| || || ||||||||||| || Sbjct 354590 GGTACAAATGGCACATCAAACGGTCTCGTACCCATGCTACGGGTGTTCAACAACACTGCT 354649 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 |||| ||| |||||||||| ||||| || | ||||||||||||||||||||| Sbjct 354650 AGGTATGTCGACCAGGGTGGCAACAAGCGACCCGGCGCATTCGCCATCTACCTCGAGCCG 354709 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 |||||||| ||||| || || || || ||||| ||| || || | || ||| | Sbjct 354710 TGGCACGCAGACATCTTGTCCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTC 354769 Query 53651 CGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 ||| |||||| |||| ||| ||||||||||| || || ||||||||| | ||| | Sbjct 354770 CGCGCTCGTGACTTGTTCTAC-GCTCTGTGGATCCCTGATCTCTTCATGAAGCGTGTGCA 354828 Query 53710 GAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTA 53769 | ||| || ||| ||||||||||||||||||||||||||||| | ||| || Sbjct 354829 AGATAACGCTGATTGGACACTGATGTGCCCGAACGAGTGCCCCGGCCTTGCCGATGTGTA 354888 Query 53770 CGGTGAGGAGTT 53781 ||| || ||||| Sbjct 354889 CGGGGATGAGTT 354900 Score = 87.8 bits (96), Expect = 2e-12 Identities = 299/456 (66%), Gaps = 15/456 (3%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| |||||||| ||||| ||||| || || || | ||||||||| Sbjct 355574 GGCGTCCGCAACTCTCTGCTCGTCGCGCCTATGCCCACAGCAAGCACATCGCAGATCATG 355633 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || ||| ||| || ||||||||||| | |||||||||| || || ||| || Sbjct 355634 GGGTTCAATGAGTGCTTTGAGCCGTACACCAGCAACATCTACTCTCGTCGTGTCCTGGCC 355693 Query 55598 GGTGAGTTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAG 55654 || ||||| || | || ||| | | || |||||||||| | || | Sbjct 355694 GGCGAGTTC--CAAG-TCGTCAACCCCTGGCTGCTCAAGGACCTTGTCGACATGGGCCTC 355750 Query 55655 TGGAACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAG---AATC 55709 |||| | | || |||| || || | || || || || || ||||| | || Sbjct 355751 TGGAGCGACAACATGAAGAACCGCATCATC-GCAGAT-GGTGGCTCTATCCAGCGCATTC 355808 Query 55710 TGGAGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG 55768 | || || | || |||||||| | || ||| || |||||||| ||| Sbjct 355809 CCAATATCCC-CGACGAGATCAAGGAGCTGTATAAGACTGTCTGGGAGATCAGCCAGCGC 355867 Query 55769 AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 | | || | ||| || |||||||| || | |||||| |||||||| || |||||| Sbjct 355868 AACATCATCCAGATGTCAGCCGATCGTGGCGCCTTCATCGATCAGTCCCAATCGCTGAAC 355927 Query 55829 ATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 ||| |||| || | || | ||| |||| | | || |||||||| ||| ||| Sbjct 355928 ATCCACATGAAGGAGCCGACGATGGGCAAGATCACGTCCATGCACTTCACCGGCTGGCGT 355987 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 ||||||||||| || |||||||| || || ||| Sbjct 355988 CTAGGACTCAAGACTGGCATGTACTACCTCCGCACC 356023 >seq176 Length=738521 Score = 203 bits (224), Expect = 4e-47 Identities = 403/588 (69%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-AC 53232 |||| ||| ||| | | ||||||| || || ||||||| || || || ||| | | Sbjct 358279 GAGAGGCCACAGCACATGATCATGCGTGTGGCAGTGGGTATACATGGCGAAGACATCGAT 358338 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 ||| | |||||||||| ||| ||| | | |||||||| || || || ||||||| Sbjct 358339 GCG-GCGATTGAGACGTACAACTACATGTCCAACAAGTACTTCACACATGCTTCGCCAAC 358397 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 ||||||| |||||| || || | ||| | | |||||| || | | ||||| Sbjct 358398 GCTGTTCAGCGCTGGCACACCACAAGCACAGCTTGCCTCATGCTTCTTGATCGACATGAA 358457 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| || || || || |||||||| || || ||| ||||| ||||| || Sbjct 358458 GGACGATAGTATTGAGGGTATCTACGACACACTGAAGACTTGTGCGATGATCTCGAAAAA 358517 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAG 53470 | ||||| ||||| || || || | | || | || |||| || | || | Sbjct 358518 CGCCGGTGGCATCGGACTCAAC-GCAC-ATCGCATTCGGGCGACTGGATCGTACATTGCG 358575 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || |||||| | | || |||| || ||||| || || |||||||||||||| Sbjct 358576 GGTACAAACGGCACATCGAACGGTCTCGTACCCATGCTACGGGTGTTCAACAACACGGCT 358635 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 | || ||| ||||||| || ||||| || |||| ||||||||||| ||||| Sbjct 358636 AGATATGTCGACCAGGGCGGCAACAAGCGTCCCGGCGCGTTTGCCATCTACCTTGAGCCA 358695 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 |||||||| ||||| || ||| ||||| || ||| ||| || || | || ||| | Sbjct 358696 TGGCACGCAGACATCTTGTCGTTCCTCGACCTCCGTAAGAACCACGGCAAGGAGGAGGTT 358755 Query 53651 CGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 ||| ||||||||||| ||| || ||||||||||| || ||||||||| || ||| | Sbjct 358756 CGCGCTCGTGACCTGTTCTAC-GCACTGTGGATTCCCGATCTCTTCATGAAACGTGTGCA 358814 Query 53710 GAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 | ||| || ||| ||||||||||||||||||| ||||| || Sbjct 358815 AGACAACGCTGATTGGACATTGATGTGCCCGAACGAGTGTCCCGGTCT 358862 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||||| | ||| ||| || |||||||| ||| | | || | ||| | Sbjct 359813 TCAAGGAGCTGTACAAGACTGTCTGGGAGATCAGCCAGCGCAACATCATCCAGATGTCAG 359872 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | |||||||| || | |||||| ||||||||||| || |||||| |||| || | || Sbjct 359873 CAGATCGTGGCGCCTTCATCGATCAGTCCCAGTCACTCAACATCCACATGAAGGAGCCAA 359932 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| |||| | | ||||||||||| ||| ||| ||||| ||||| || | Sbjct 359933 CTATGGGCAAGATCACGTCGATGCACTTCACCGGCTGGCGTCTCGGACTGAAGACTGGCA 359992 Query 55908 TGTACTATCTGCGGACC 55924 ||||||| || || ||| Sbjct 359993 TGTACTACCTCCGTACC 360009 >seq250 Length=1224031 Score = 120 bits (132), Expect = 3e-22 Identities = 294/443 (66%), Gaps = 2/443 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || ||||| ||||| | ||| | |||||| ||||| || | || | | Sbjct 909826 CCTGTGCCGATACCATCTGCGCCGTTAATCAGGACCATCGGAACAATGGGCGAATACATC 909885 Query 151936 TCCGGCTCCACC-TGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGG 151994 || ||||| | | ||| ||||||||| | ||| |||| | || | ||||| | | Sbjct 909886 TCGGGCTCAATGGTCTTG-CCGTCATCCGTATTGTACGTCAAGAGGGCCTCGTCAGTCTG 909944 Query 151995 ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054 || ||| || || || | | || | || ||| |||| ||||| | ||||| || Sbjct 909945 ATGGAAGATGCGACGGGCGAAGGGCGAGAGGCGAGTGTAGATATATCGAGCACTGGCAGC 910004 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||| |||||||| || || | || || | ||| ||||| || ||||| ||| Sbjct 910005 ATCGTTGCCACCCTGAAGACGAGAACCGAAATTGCCACTAGGCTCCAGACAGTTGATGTT 910064 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 ||| | ||| |||||| |||| |||| ||||| || ||||| || || || Sbjct 910065 GTTCGAGCCAACGAAAGTCTGTGCCAGGCCAACAATTGTCTGCTGCATGGACGTCTCGCC 910124 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 | || || ||| | | | || | | || |||| || | | ||||| ||||| | Sbjct 910125 ATACGCGTATGCGGTCAGACCAGAGACGGAGCCAGCCAGCTCCACGACCTTGATGTCTTT 910184 Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 ||||||| | ||| ||||| ||| | ||| || |||||| || || | || || Sbjct 910185 TTTCAGGTTGCGCCTGAAACAGGTGTACAGCACTTTCCGCTGGCTGGGCTTGAGCCCATC 910244 Query 152295 CACCACGTGAGGAATCGAACGCT 152317 ||||| ||||||||||||| Sbjct 910245 AACCACAGATGGAATCGAACGCT 910267 >seq68 Length=974892 Score = 100 bits (110), Expect = 3e-16 Identities = 293/446 (66%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| ||||||||||| || ||||| |||| || | ||| ||||| || || | ||| | Sbjct 95379 ATCCTGTACCGATGCCGTCGGCACCATTGATAAGGACCATTGGCACGATCGGAGAGTACA 95320 Query 151934 ACTCCGGCTCCA-CCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCC 151992 ||| ||||| | | | ||| |||||||| | ||| |||| | | | ||||| | Sbjct 95319 TCTCAGGCTCGATCGTCTTG-CCGTCATCGGTGTTGTACGTCAAGAGAGCCTCGTCAGTC 95261 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 | | ||| || || || | | || | || ||| ||||||| || | |||||| Sbjct 95260 TGGTGGAAAATGCGACGGGCGAAGGGTGAGAGGCGAGTGTAGATGTAACGTGCGCTGGCA 95201 Query 152053 GCATCCTTGCC-ACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111 ||||| || || ||||| || || | || || | || |||||||| ||||| Sbjct 95200 GCATCGTTACCTCCCTGCAAG-CGGGAACCGAAATTGCCGCTAGGCTCGAGACAGTTGAT 95142 Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171 |||||||| |||||||| | || || | | |||||||| ||||| || || Sbjct 95141 GTTGTTGGATCCCACGAAGGTTTGGGCGAGACCGACAATCGTCTGCTGCATTGACGTCTC 95082 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 || | || || ||| || | | || |||| || | || | ||||| ||||| Sbjct 95081 GCCATATGCGTAGGCTGTCAGCCCAGAGACTGATCCAGCAAGCTCGACAACCTTGATGTC 95022 Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291 | || ||| ||| | || |||| || | ||||| ||||| || || | || Sbjct 95021 CTTCTTCAAGTTGCGCCGGAAGCAGGTATACAAAACCTTCCGCTGACTGGGCTTGAGCCC 94962 Query 152292 GTCCACCACGTGAGGAATCGAACGCT 152317 ||| || ||| || |||||||||| Sbjct 94961 GTCGACTACGGATGGTATCGAACGCT 94936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214173666600