Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq228 123 2e-23 seq184 113 4e-20 >seq228 Length=1254254 Score = 123 bits (136), Expect = 2e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || ||||| || ||||||||||| | || || ||||| ||||| |||||| | || Sbjct 556231 TTCGTAAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 556172 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || ||||||||||| ||||| || || || || ||||| || Sbjct 556171 GACAATGTCAAGAGCAAGATCCAAGACAAAGAGGGCATCCCGCCAGACCAGCAGCGCTTG 556112 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | ||||||||| || | || || | ||| | |||||||||||||| || ||| Sbjct 556111 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAACATCCAGAAG 556052 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||| | ||| | || | ||| |||| ||||| || Sbjct 556051 GAGTCCACCCTCCATCTCGTCCTCCGTCTGCGTGGTGGTAT 556011 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || |||||| | || || || || |||||| | || Sbjct 555784 ATGCAAATCTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 555725 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||| || || || || || ||||| ||||| Sbjct 555724 GACACAATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGATCAG 555665 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || ||||| ||| | ||| | ||| |||||| Sbjct 555664 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGGACGTTGAGCGACTACAAC 555605 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||||||||| | || ||||| |||||||||| || || Sbjct 555604 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTTTGCGTGGAGG 555558 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 27080 AGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGA 27139 |||||| || || || ||||| || || ||||| || || | ||||||||| || | || Sbjct 1164939 AGACAAGGAGGGTATCCCACCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGA 1164998 Query 27140 AGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 ||| | ||| ||||||| |||||||| || ||||||||||| | || |||| | Sbjct 1164999 GGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTTCACCTGGTCCT 1165058 Query 27200 GCGTTTGCGGGGTGGCAT 27217 ||| | || ||||| || Sbjct 1165059 GCGCCTCCGTGGTGGTAT 1165076 >seq184 Length=1511567 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || |||||| | || || || || |||||| | || Sbjct 735699 ATGCAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 735640 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || ||||| || || || || || ||||| || || Sbjct 735639 GACACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 735580 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || ||||| ||| | ||| | ||| |||||| Sbjct 735579 CAGCGTCTCATCTTCGCCGGGAAGCAGTTGGAGGACGGCAGGACTTTGAGCGACTACAAC 735520 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | || ||||| | ||| |||| || || Sbjct 735519 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTACGTCTGCGTGGAGG 735473 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || ||||| ||||||||||| | || || ||||| ||||| |||||| | || Sbjct 736146 TTCGTCAAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 736087 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || |||||||| || ||||| || || || || ||||| || Sbjct 736086 GACAATGTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTG 736027 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | ||||||||| || | || || | ||| | ||||| |||||||| || || Sbjct 736026 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAA 735967 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||| | ||| | || | ||| |||| ||||| || Sbjct 735966 GAGTCCACCCTTCATCTCGTCCTCCGTCTGCGTGGTGGTAT 735926 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || || || || || | ||| Sbjct 735927 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCATCC 735868 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || || || || || || ||| Sbjct 735867 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCAA 735808 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| ||| | || ||| | || ||||||| || ||| Sbjct 735807 CAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTATAAC 735748 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 735747 ATCCAGAAGGAGTCGAC 735731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916948459840