Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq228 123 2e-23
seq184 113 4e-20
>seq228
Length=1254254
Score = 123 bits (136), Expect = 2e-23
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056
|| ||||| || ||||||||||| | || || ||||| ||||| |||||| | ||
Sbjct 556231 TTCGTAAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 556172
Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116
|| | ||||| || || ||||||||||| ||||| || || || || ||||| ||
Sbjct 556171 GACAATGTCAAGAGCAAGATCCAAGACAAAGAGGGCATCCCGCCAGACCAGCAGCGCTTG 556112
Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176
|| | ||||||||| || | || || | ||| | |||||||||||||| || |||
Sbjct 556111 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAACATCCAGAAG 556052
Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||| | ||| | || | ||| |||| ||||| ||
Sbjct 556051 GAGTCCACCCTCCATCTCGTCCTCCGTCTGCGTGGTGGTAT 556011
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || ||||| || |||||| | || || || || |||||| | ||
Sbjct 555784 ATGCAAATCTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 555725
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || ||||| || || || || || ||||| |||||
Sbjct 555724 GACACAATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGATCAG 555665
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||| || || || ||||| ||| | ||| | ||| ||||||
Sbjct 555664 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGGACGTTGAGCGACTACAAC 555605
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| ||||||||||| | || ||||| |||||||||| || ||
Sbjct 555604 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTTTGCGTGGAGG 555558
Score = 82.4 bits (90), Expect = 7e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 27080 AGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGA 27139
|||||| || || || ||||| || || ||||| || || | ||||||||| || | ||
Sbjct 1164939 AGACAAGGAGGGTATCCCACCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGA 1164998
Query 27140 AGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199
||| | ||| ||||||| |||||||| || ||||||||||| | || |||| |
Sbjct 1164999 GGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTTCACCTGGTCCT 1165058
Query 27200 GCGTTTGCGGGGTGGCAT 27217
||| | || ||||| ||
Sbjct 1165059 GCGCCTCCGTGGTGGTAT 1165076
>seq184
Length=1511567
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || ||||| || |||||| | || || || || |||||| | ||
Sbjct 735699 ATGCAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 735640
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| || | || || || ||||| || || || || || ||||| || ||
Sbjct 735639 GACACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 735580
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | |||||| || || ||||| ||| | ||| | ||| ||||||
Sbjct 735579 CAGCGTCTCATCTTCGCCGGGAAGCAGTTGGAGGACGGCAGGACTTTGAGCGACTACAAC 735520
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || ||||||||||| | || ||||| | ||| |||| || ||
Sbjct 735519 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTACGTCTGCGTGGAGG 735473
Score = 111 bits (122), Expect = 1e-19
Identities = 157/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056
|| || ||||| ||||||||||| | || || ||||| ||||| |||||| | ||
Sbjct 736146 TTCGTCAAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 736087
Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116
|| | ||||| || || |||||||| || ||||| || || || || ||||| ||
Sbjct 736086 GACAATGTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTG 736027
Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176
|| | ||||||||| || | || || | ||| | ||||| |||||||| || ||
Sbjct 736026 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAA 735967
Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||| | ||| | || | ||| |||| ||||| ||
Sbjct 735966 GAGTCCACCCTTCATCTCGTCCTCCGTCTGCGTGGTGGTAT 735926
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || ||||||||| | || || || || || || | |||
Sbjct 735927 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCATCC 735868
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || || ||||| || || || || || || |||
Sbjct 735867 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCAA 735808
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||||||||| ||| | || ||| | || ||||||| || |||
Sbjct 735807 CAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTATAAC 735748
Query 27168 ATTCAAAAGGAGTCGAC 27184
|| || |||||||||||
Sbjct 735747 ATCCAGAAGGAGTCGAC 735731
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434916948459840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |