Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq181 91.5 1e-13 seq101 82.4 7e-11 >seq181 Length=738230 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34642 GCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGC 34701 |||||| |||||||| | |||||||| | || ||||||||||||||||| ||||| Sbjct 657740 GCTCTACCAACGATCTTGCGACATGGGACTCGGCGTGCCGTTCAACATTGCCTCGTACGC 657799 Query 34702 TCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATAC 34761 || || || ||||| |||| | | || || ||| | ||||| |||| |||||| Sbjct 657800 GCTACTTACACACATGCTCGCGCGTTGCGCGGACTTGATCCCTGGCACGCTGACGCATAC 657859 Query 34762 GTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACG 34821 |||| ||||| || | || || ||||| ||| |||| | ||| | ||| Sbjct 657860 CATGGGCGATGCACACGTATATCTCGACCACCGCGAAGCGCTCGAGCAGCAGAT--CACG 657917 Query 34822 A--GAGCCCCGACCGTTCCCCCAGCTCAAAATT 34852 | | ||| || ||||||| ||||||||||| Sbjct 657918 AGGGTGCCGAGAGCGTTCCCTGAGCTCAAAATT 657950 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 6493 AATTTTGAGCTGGGGGAACGGTCGGGGCTC--TCGTTGCAGCTGGATCCGGAGCCGCTCG 6550 ||||||||||| ||||||| || ||| | |||| | ||| | |||| ||| Sbjct 657950 AATTTTGAGCTCAGGGAACGCTCTCGGCACCCTCGTG--ATCTGCTGCTCGAGCGCTTCG 657893 Query 6551 ATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAAC 6610 ||||| || || | || ||||| |||| |||||| |||| ||||| | ||| Sbjct 657892 CGGTGGTCGAGATATACGTGTGCATCGCCCATGGTATGCGTCAGCGTGCCAGGGATCAAG 657833 Query 6611 CCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACC 6670 || || | | |||| ||||| || || || ||||| ||||||||||||||||| Sbjct 657832 TCCGCGCAACGCGCGAGCATGTGTGTAAGTAGCGCGTACGAGGCAATGTTGAACGGCACG 657773 Query 6671 CCTAACCCCATGTCTCCCGATCGTTGATAGAGC 6703 || | |||||||| | |||||||| |||||| Sbjct 657772 CCGAGTCCCATGTCGCAAGATCGTTGGTAGAGC 657740 >seq101 Length=921267 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 34385 CGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAG 34444 || ||||| ||||| | || || |||||||| ||||||||| | ||||| || || ||| Sbjct 837472 CGCGAGGAAGGCGATCTCGGACCAGTCTACGGCTTCCAGTGGCGGCACTTCGGCGCTGAG 837531 Query 34445 TATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTG 34492 || | || || | ||||||||| | || |||| |||||||||||| Sbjct 837532 TACCAGGACTGCCATGCGGACTATACTGGCAAGGGTGCGGACCAGCTG 837579 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAA 6912 |||||||||||| |||| || | ||||||||| | || || | ||||| || || || Sbjct 837579 CAGCTGGTCCGCACCCTTGCCAGTATAGTCCGCATGGCAGTCCTGGTACTCAGCGCCGAA 837520 Query 6913 GTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCG 6960 ||| | ||||||||| |||||||| || || | ||||| ||||| || Sbjct 837519 GTGCCGCCACTGGAAGCCGTAGACTGGTCCGAGATCGCCTTCCTCGCG 837472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260903924240