Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq228 185 2e-41 seq184 185 2e-41 seq207 134 3e-26 seq204 129 1e-24 seq198 109 1e-18 seq193 98.7 2e-15 seq176 86.0 1e-11 >seq228 Length=1254254 Score = 185 bits (204), Expect = 2e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| || || || |||||||| || || | ||| || | || || Sbjct 555801 AGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCGTCC 555860 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| ||||||| || ||||| ||| Sbjct 555861 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTATCC 555920 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| ||| ||||||||||| ||||| ||| Sbjct 555921 TGGATCTTCGACTTCACGTTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 555980 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 555981 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 556012 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || |||||||| || |||||||| ||||| | ||||| | ||||| Sbjct 556029 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCC 556088 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || || | || || ||||| Sbjct 556089 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTCT 556148 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 556149 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTC 556208 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || || || | |||||||| || Sbjct 556209 TTGCCGGTCAAGGTCTTTACGAA 556231 Score = 134 bits (148), Expect = 3e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || | ||| || || ||||| || || ||||| || || | ||| | ||| || || Sbjct 555573 AGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACG-TCCGGCCGTC 555631 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||| |||||| || ||||||||||| || || || || || || | || ||||| || Sbjct 555632 CTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGGATACCCTCCTTATC 555691 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| ||||| |||||||| ||||| ||||| || ||| |||||||| ||||| || Sbjct 555692 CTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGATTCCACCTCGAGCGTGATGGT 555751 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||||||||| || || | ||||| Sbjct 555752 CTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||||||||| ||||| || |||||||| || || | |||||| | || || Sbjct 1165058 AGGACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCC 1164999 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| | ||| || |||||||| || | || |||||||| Sbjct 1164998 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 1164940 >seq184 Length=1511567 Score = 185 bits (204), Expect = 2e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| ||||| || ||||||||||| || | ||| || | || || Sbjct 735716 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCGGAAAGAGTGCGGCCGTCC 735775 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||| || ||||| |||||||| ||||||| || ||||||||| Sbjct 735776 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATACCCTCCTTGTCC 735835 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || ||||||||||| ||||| ||| Sbjct 735836 TGGATCTTCGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCGAGGGTGATGGTC 735895 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 735896 TTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 735927 Score = 163 bits (180), Expect = 7e-35 Identities = 149/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| ||||||||||| |||||||| || || | ||||| | ||||| Sbjct 735944 AGGACGAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 736003 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| ||||||| || |||||||| Sbjct 736004 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 736063 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 736064 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTC 736123 Query 211083 TTTCCCGT 211090 || || || Sbjct 736124 TTGCCGGT 736131 Score = 149 bits (164), Expect = 1e-30 Identities = 170/226 (75%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948 || ||| || | ||| || | ||| || || ||||| || |||||||| || || | ||| Sbjct 735475 TCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAA 735534 Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | |||| || || |||| |||||| || |||||||| || || || ||||| || || | Sbjct 735535 AG-TCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGA 735593 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 || ||||| ||||| ||||| |||||||| ||||| ||||| || ||| |||| Sbjct 735594 TACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGATTCCACCT 735653 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| ||||| ||||| || ||||||||||| || || | ||||| Sbjct 735654 CGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 735699 >seq207 Length=296016 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| ||||| || ||||| ||||| || |||||||| || ||||| || Sbjct 212927 TTCTGGATGTTGTAATCGCTCAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCGAAAATC 212986 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || ||||| || || | ||| ||||||||||||||||| || || || ||| Sbjct 212987 AACCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 213046 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || |||||||| ||||| ||||| |||||||| ||||| || || Sbjct 213047 ATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 213105 >seq204 Length=319970 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| ||||| || ||||| ||||| || |||||||| || ||||| || Sbjct 82044 TTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAATC 81985 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||| || ||||| || || | ||| ||||||||||||||||| || || || ||| Sbjct 81984 AAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 81925 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| || || ||||| || ||||| ||||| |||||||| ||||| || || Sbjct 81924 ATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 81866 >seq198 Length=398492 Score = 109 bits (120), Expect = 1e-18 Identities = 194/281 (69%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCA---TCTTTGTACGCAATGAAGGGC 178144 || |||||||| ||||||||||| | | ||||| ||||||||| ||| | || Sbjct 355059 CCCAAGTTCTTCTGGTTGCTCTTGCGGT---TGGCAGCGTCTTTGTACAGCATGTACGGG 355003 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || ||| | |||||| |||||||| || ||||| || |||||| || | |||| Sbjct 355002 TTGCCAGTCTCGGTCTGAGCCTCGAGAATGGCATACCAAATCTTCTGGGCGCGCATAGTC 354943 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 | | || ||||| | |||||| | |||||||| | ||||| || || || Sbjct 354942 TCAC---CCTTGCCTTCGCTTTCGTACCGTGTGTAGAGCGCTTCGAACTCATCCCCGTAC 354886 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 ||||| | || ||||| ||| || ||||| | || |||| | | ||| || | | Sbjct 354885 ACATCGGCAAGGCCGGGGCACTCGTTCGGGCACATCAGTGTCCAATCAGCGTTATCTTGC 354826 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || || ||||||||||| |||| | |||| | || ||||| Sbjct 354825 ACACGCTTCATGAAGAGATCAGGGATCCACAGAGCGTAGAA 354785 >seq193 Length=432561 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || |||||||| |||||||| || || | ||||| | || || Sbjct 90601 AGGACTAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 90660 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| | ||| || |||||||| || | || |||||||| Sbjct 90661 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 90719 >seq176 Length=738521 Score = 86.0 bits (94), Expect = 1e-11 Identities = 186/278 (67%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATT 178147 || ||||| || ||||||||||| | | ||| ||||| ||| ||| | || | Sbjct 359045 CCCAAGTTTTTCTGGTTGCTCTTGCGGTTGGCGGCGTCTTTATACAGCATGTACGGGTTG 358986 Query 178148 CCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTT 178207 || ||| | |||||| | |||||| || ||| | | |||||| || | ||||| Sbjct 358985 CCAGTCTCGGTCTGAGCCTCAAGAATGGCATACCAGATTTTCTGGGCGCGCATAGTCTCA 358926 Query 178208 TTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACA 178267 | || ||||| ||||||| |||||||| | || ||||| ||| || || Sbjct 358925 C---CCTTGCCTTCGCTCTCGTATCGAGTGTAGAGCGCTTCAAATTCGTCTCCGTAAACG 358869 Query 178268 TCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACT 178327 || | ||||||||| ||| || ||||| | | |||| | | ||| || | ||| Sbjct 358868 TCGGCAAGACCGGGACACTCGTTCGGGCACATCAATGTCCAATCAGCGTTGTCTTGCACA 358809 Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 |||||||||||||| || | |||| | || ||||| Sbjct 358808 CGTTTCATGAAGAGATCGGGAATCCACAGTGCGTAGAA 358771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148034613455