Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq228 150 4e-31
seq184 150 4e-31
seq207 116 9e-21
seq204 107 5e-18
>seq228
Length=1254254
Score = 150 bits (166), Expect = 4e-31
Identities = 155/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || ||||| ||||| || || |||| |||||||||| | || | |||||
Sbjct 556029 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCC 556088
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || ||||| ||||| || || || ||||||
Sbjct 556089 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTCT 556148
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| ||| | ||||| || | ||||| |||
Sbjct 556149 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTC 556208
Query 225682 TTGCCCGTCAAAGTTTTTATGAA 225704
||||| ||||| || |||| |||
Sbjct 556209 TTGCCGGTCAAGGTCTTTACGAA 556231
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||||||||| ||||| || |||| ||||| |||| | ||| | || ||
Sbjct 555801 AGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCGTCC 555860
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| || || || ||||| || |||||||| ||||| ||
Sbjct 555861 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTATCC 555920
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| ||||||||||| |||| || || || | ||||| |||
Sbjct 555921 TGGATCTTCGACTTCACGTTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 555980
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | ||| | |||||
Sbjct 555981 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 556012
Score = 127 bits (140), Expect = 5e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || | ||| || || || || || || | ||||| ||| ||| || | || ||
Sbjct 555572 CAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTCCGGCCGTC 555631
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
|| | |||||| |||||||||||||| || || || || || || ||||| ||||| ||
Sbjct 555632 CTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGGATACCCTCCTTATC 555691
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|| ||||| |||||| ||||| |||||||| | |||||| || | |||||| ||
Sbjct 555692 CTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGATTCCACCTCGAGCGTGATGGT 555751
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| || | ||| || | ||| | ||||||
Sbjct 555752 CTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784
>seq184
Length=1511567
Score = 150 bits (166), Expect = 4e-31
Identities = 155/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || || ||||| ||||| |||| ||||| |||| | || | |||||
Sbjct 735944 AGGACGAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 736003
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || ||||| || ||||| || |||||||||
Sbjct 736004 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 736063
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| ||| | ||||| || | ||||| |||
Sbjct 736064 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTC 736123
Query 225682 TTGCCCGTCAAAGTTTTTATGAA 225704
||||| ||||| ||||| | |||
Sbjct 736124 TTGCCGGTCAAGGTTTTGACGAA 736146
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||||||||| || || || |||| || || |||| | ||| | || ||
Sbjct 735716 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCGGAAAGAGTGCGGCCGTCC 735775
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || ||||| || || || |||||||| || |||||||| ||||||||
Sbjct 735776 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATACCCTCCTTGTCC 735835
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || | || || || | ||||| |||
Sbjct 735836 TGGATCTTCGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCGAGGGTGATGGTC 735895
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | ||| | |||||
Sbjct 735896 TTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 735927
>seq207
Length=296016
Score = 116 bits (128), Expect = 9e-21
Identities = 124/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||||||| || || |||||||| || |||||||| || ||||| ||
Sbjct 212927 TTCTGGATGTTGTAATCGCTCAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCGAAAATC 212986
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| || || ||||| ||||| || || |||||||| |||||||| ||| ||| |||
Sbjct 212987 AACCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 213046
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| ||||| |||| || || || | ||||| |||||||||||
Sbjct 213047 ATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 213090
>seq204
Length=319970
Score = 107 bits (118), Expect = 5e-18
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| |||||||| || || || ||||| || |||||||| || ||||| ||
Sbjct 82044 TTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAATC 81985
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| || || ||||| ||||| || || |||||||| |||||||| ||| ||| |||
Sbjct 81984 AAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 81925
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| ||||| || | ||||| || | ||||| |||||||||||
Sbjct 81924 ATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGT 81881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192527120425298
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |