Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq176 147 3e-30 seq1 143 4e-29 >seq176 Length=738521 Score = 147 bits (162), Expect = 3e-30 Identities = 316/471 (67%), Gaps = 1/471 (0%) Strand=Plus/Minus Query 77893 GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCA 77952 |||| || || || ||| |||| || ||| ||||||||| ||||| |||| || | | Sbjct 358920 GCCT-TCGCTCTCGTATCGAGTGTAGAGCGCTTCAAATTCGTCTCCGTAAACGTCGGCAA 358862 Query 77953 ATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCA 78012 || || || || || ||||||||||||| ||| ||| | | || | || ||||||| Sbjct 358861 GACCGGGACACTCGTTCGGGCACATCAATGTCCAATCAGCGTTGTCTTGCACACGTTTCA 358802 Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTC 78072 | |||||||| || ||||| || || || || || || | | | || || || | Sbjct 358801 TGAAGAGATCGGGAATCCACAGTGCGTAGAACAGGTCACGAGCGCGAACCTCCTCCTTGC 358742 Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132 | ||||| || ||||| ||| || || || | |||||||| || || || | Sbjct 358741 CGTGGTTCTTACGGAGGTCGAGGAACGACAAGATGTCTGCGTGCCATGGCTCAAGGTAGA 358682 Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192 | || | | || || || || || || ||||| || | |||||| || ||||| || Sbjct 358681 TGGCAAACGCGCCGGGACGCTTGTTGCCGCCCTGGTCGACATATCTAGCCGTGTTGTTGA 358622 Query 78193 AAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTC 78252 | || | | ||| || | | |||||| ||||| || ||||| || | ||| || || Sbjct 358621 ACACCCGTAGCATGGGTACGAGACCGTTCGATGTGCCGTTTGTACCCGCAATGTACGATC 358562 Query 78253 CACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAG 78312 || | || ||||| | | | || || || || || | || || || | | Sbjct 358561 CAGTCGCCCGAATGCGATGTGCGTTGAGTCCGATGCCACCGGCGTTTTTCGAGATCATCG 358502 Query 78313 CGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGT 78363 | ||| |||| ||| |||||||||||||| ||||| || ||| |||||| Sbjct 358501 CACAAGTCTTCAGTGTGTCGTAGATACCCTCAATACTATCGTCCTTCATGT 358451 >seq1 Length=1805414 Score = 143 bits (158), Expect = 4e-29 Identities = 344/518 (66%), Gaps = 12/518 (2%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || ||||| |||||||| || || || || |||||||| || || || ||| Sbjct 289897 TCGTTGGAGAAGGTGAGGCCGGGCATCAGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCG 289838 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || ||||| ||||| ||||| || || || || || ||| | || | ||| | Sbjct 289837 AACGAACCAGAGAAGAAAATGCCCTCGACAGCTGCGAAGGCGATGAGACGGCAGCCGAAG 289778 Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 | | | ||| || |||||| | ||||||| | |||||||| | || || Sbjct 289777 GTCGATGCGTCGTCGCTGATCCACTTTAGTGCCCAGTTGGCCTTCTTGCGGATGCACGGG 289718 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTT---TAACGTAAGTA 48416 || | || ||||| |||||||| || | | | || | || | | ||| || Sbjct 289717 ATATTGTCGATAGCGTTAAAGAG---GTATGTGCGTTGGCGAGGTTCGCTGATGTAGGTG 289661 Query 48417 TCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAA 48476 || || | || || | |||||||| ||||| || || ||||| || ||||| Sbjct 289660 TCGATAAGTAGTGAGTAGGTCTCGGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAG 289601 Query 48477 AAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTT 48536 || || | || || | ||| || ||||| || |||||| || ||| ||||| || Sbjct 289600 AAGCAGCGAGCCTCAGGGATTTGCACCTCGCCACTAAATCGCTCGACCAGGTTCTCGTTG 289541 Query 48537 ACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTG 48596 || || || || || || || || || | |||||| ||| || || |||| Sbjct 289540 ACGATGCCGTCTGATGCGGCGAAGAAGGCAAGCACATGTGAAATGAAGAATCGCTCGTCA 289481 Query 48597 GAAGTCAGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 48653 | | || || |||||||| | | |||||| || | ||| | || || |||||| Sbjct 289480 TCATTGAGACGCTTGTTCCAGTCGTGCAGATCTTTCGACAGATCAATCTCCTCTGCTGTC 289421 Query 48654 CAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || |||||||||||||| || || ||||| | |||||| Sbjct 289420 CAGAATGATGCCTCTGCCTTCTTGTACATCTGCCATAT 289383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666481542880