Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq176 147 3e-30
seq1 143 4e-29
>seq176
Length=738521
Score = 147 bits (162), Expect = 3e-30
Identities = 316/471 (67%), Gaps = 1/471 (0%)
Strand=Plus/Minus
Query 77893 GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCA 77952
|||| || || || ||| |||| || ||| ||||||||| ||||| |||| || | |
Sbjct 358920 GCCT-TCGCTCTCGTATCGAGTGTAGAGCGCTTCAAATTCGTCTCCGTAAACGTCGGCAA 358862
Query 77953 ATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCA 78012
|| || || || || ||||||||||||| ||| ||| | | || | || |||||||
Sbjct 358861 GACCGGGACACTCGTTCGGGCACATCAATGTCCAATCAGCGTTGTCTTGCACACGTTTCA 358802
Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTC 78072
| |||||||| || ||||| || || || || || || | | | || || || |
Sbjct 358801 TGAAGAGATCGGGAATCCACAGTGCGTAGAACAGGTCACGAGCGCGAACCTCCTCCTTGC 358742
Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132
| ||||| || ||||| ||| || || || | |||||||| || || || |
Sbjct 358741 CGTGGTTCTTACGGAGGTCGAGGAACGACAAGATGTCTGCGTGCCATGGCTCAAGGTAGA 358682
Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192
| || | | || || || || || || ||||| || | |||||| || ||||| ||
Sbjct 358681 TGGCAAACGCGCCGGGACGCTTGTTGCCGCCCTGGTCGACATATCTAGCCGTGTTGTTGA 358622
Query 78193 AAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTC 78252
| || | | ||| || | | |||||| ||||| || ||||| || | ||| || ||
Sbjct 358621 ACACCCGTAGCATGGGTACGAGACCGTTCGATGTGCCGTTTGTACCCGCAATGTACGATC 358562
Query 78253 CACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAG 78312
|| | || ||||| | | | || || || || || | || || || | |
Sbjct 358561 CAGTCGCCCGAATGCGATGTGCGTTGAGTCCGATGCCACCGGCGTTTTTCGAGATCATCG 358502
Query 78313 CGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGT 78363
| ||| |||| ||| |||||||||||||| ||||| || ||| ||||||
Sbjct 358501 CACAAGTCTTCAGTGTGTCGTAGATACCCTCAATACTATCGTCCTTCATGT 358451
>seq1
Length=1805414
Score = 143 bits (158), Expect = 4e-29
Identities = 344/518 (66%), Gaps = 12/518 (2%)
Strand=Plus/Minus
Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242
||||| || || ||||| |||||||| || || || || |||||||| || || || |||
Sbjct 289897 TCGTTGGAGAAGGTGAGGCCGGGCATCAGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCG 289838
Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302
|| || ||||| ||||| ||||| || || || || || ||| | || | ||| |
Sbjct 289837 AACGAACCAGAGAAGAAAATGCCCTCGACAGCTGCGAAGGCGATGAGACGGCAGCCGAAG 289778
Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359
| | | ||| || |||||| | ||||||| | |||||||| | || ||
Sbjct 289777 GTCGATGCGTCGTCGCTGATCCACTTTAGTGCCCAGTTGGCCTTCTTGCGGATGCACGGG 289718
Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTT---TAACGTAAGTA 48416
|| | || ||||| |||||||| || | | | || | || | | ||| ||
Sbjct 289717 ATATTGTCGATAGCGTTAAAGAG---GTATGTGCGTTGGCGAGGTTCGCTGATGTAGGTG 289661
Query 48417 TCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAA 48476
|| || | || || | |||||||| ||||| || || ||||| || |||||
Sbjct 289660 TCGATAAGTAGTGAGTAGGTCTCGGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAG 289601
Query 48477 AAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTT 48536
|| || | || || | ||| || ||||| || |||||| || ||| ||||| ||
Sbjct 289600 AAGCAGCGAGCCTCAGGGATTTGCACCTCGCCACTAAATCGCTCGACCAGGTTCTCGTTG 289541
Query 48537 ACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTG 48596
|| || || || || || || || || | |||||| ||| || || ||||
Sbjct 289540 ACGATGCCGTCTGATGCGGCGAAGAAGGCAAGCACATGTGAAATGAAGAATCGCTCGTCA 289481
Query 48597 GAAGTCAGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 48653
| | || || |||||||| | | |||||| || | ||| | || || ||||||
Sbjct 289480 TCATTGAGACGCTTGTTCCAGTCGTGCAGATCTTTCGACAGATCAATCTCCTCTGCTGTC 289421
Query 48654 CAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691
|| |||||||||||||| || || ||||| | ||||||
Sbjct 289420 CAGAATGATGCCTCTGCCTTCTTGTACATCTGCCATAT 289383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694666481542880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |