Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 122 1e-22 >seq1 Length=1805414 Score = 122 bits (134), Expect = 1e-22 Identities = 339/516 (66%), Gaps = 8/516 (2%) Strand=Plus/Minus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| || || ||||| || ||||| || || ||||| |||||||| || ||||| ||| Sbjct 289897 TCGTTGGAGAAGGTGAGGCCGGGCATCAGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCG 289838 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 || || ||||| ||||| ||||| || ||||| ||||| |||| || | ||| | Sbjct 289837 AACGAACCAGAGAAGAAAATGCCCTCGACAGCTGCGAAGGCGATGAGACGGCAGCCGAAG 289778 Query 46792 CTGG---CATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 | | | || | |||||| || | ||||| | ||||| || | || || Sbjct 289777 GTCGATGCGTCGTCGCTGATCCACTTTAGTGCCCAGTTGGCCTTCTTGCGGATGCACGGG 289718 Query 46849 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCT 46908 || | || ||||| |||||||| | | || | || | | || || || Sbjct 289717 ATATTGTCGATAGCGTTAAAGAGGTATGTGCGTTGGCGAGGTTCGCTGATGTAGGTGTCG 289658 Query 46909 ATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968 || | || || | || || || || || || || ||||| || ||||| || Sbjct 289657 ATAAGTAGTGAGTAGGTCTCGGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAG 289598 Query 46969 CATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACT 47028 || | || |||| || || ||||| || |||||| || || ||||| || || Sbjct 289597 CAGCGAGCCTCAGGGATTTGCACCTCGCCACTAAATCGCTCGACCAGGTTCTCGTTGACG 289538 Query 47029 ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATAT---TTTTCATCG 47085 || || || || || || || || | |||||| ||| || || | ||||| Sbjct 289537 ATGCCGTCTGATGCGGCGAAGAAGGCAAGCACATGTGAAATGAAGAATCGCTCGTCATCA 289478 Query 47086 GT-AGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 47144 | || | | || |||||||| | | |||||| || | ||| | || || |||||||| Sbjct 289477 TTGAGAC-GCTTGTTCCAGTCGTGCAGATCTTTCGACAGATCAATCTCCTCTGCTGTCCA 289419 Query 47145 GAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 |||||| |||||||| || || ||||| | |||||| Sbjct 289418 GAATGATGCCTCTGCCTTCTTGTACATCTGCCATAT 289383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712932020581440