Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq228 122 2e-22 seq184 118 2e-21 seq207 107 4e-18 seq204 102 2e-16 >seq228 Length=1254254 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| || || ||||| || |||||||||||||||| | || | ||||| Sbjct 556028 GAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATC 556087 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| | | ||||||||| | || ||| || || || || Sbjct 556088 CTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTC 556147 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| | || | | |||| || ||||| || ||||| || || || Sbjct 556148 TTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGT 556207 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAG 152096 ||||| || | ||||| |||||| Sbjct 556208 CTTGCCGGTCAAGGTCTTTACGAAG 556232 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| || || || ||||||||||| |||| | ||| | || || Sbjct 555801 AGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCGTCC 555860 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | | || || ||||| || Sbjct 555861 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTATCC 555920 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || | || | | |||| || ||| || || || || || || Sbjct 555921 TGGATCTTCGACTTCACGTTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 555980 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| ||||||| |||||| Sbjct 555981 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 556012 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || || |||||||| ||| || || | || || || | Sbjct 555578 CAAG-TGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTCCGGCCGTCCTCCA 555636 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || ||||||||||| | |||||| || | | ||| || ||||| || |||| Sbjct 555637 ACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGGATACCCTCCTTATCCTGAA 555696 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | ||||||| || || || || || || || |||| Sbjct 555697 TCTTCGACTTCACGTTGTCGATTGTGTCTGATGATTCCACCTCGAGCGTGATGGTCTTGC 555756 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||||||||| ||||||| ||||| Sbjct 555757 CTGTGAGAGTCTTGACGAAGATTTGCAT 555784 >seq184 Length=1511567 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| |||||||| || |||||||| ||||||||||| |||| | || | ||||| Sbjct 735943 GAGGACGAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 736002 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| | | ||||||||| | | || || ||||| || Sbjct 736003 CTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTC 736062 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| | || | | |||| || ||||| || ||||| || || || Sbjct 736063 TTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGT 736122 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAG 152096 ||||| || | || || |||||| Sbjct 736123 CTTGCCGGTCAAGGTTTTGACGAAG 736147 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| ||| ||||| || || || || | Sbjct 735493 CAAG-TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTCCTGCCGTCCTCCA 735551 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 |||||||||||||| || | ||||||||| | | ||| || ||||| || |||| Sbjct 735552 ACTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAA 735611 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | ||||||| || || || || || || || |||| Sbjct 735612 TCTTCGACTTCACGTTGTCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTCTTGC 735671 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||||||||| ||||| | ||||| Sbjct 735672 CTGTGAGAGTCTTGACGAAAATTTGCAT 735699 >seq207 Length=296016 Score = 107 bits (118), Expect = 4e-18 Identities = 134/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974 || ||||||||||||||| | || |||||||| || || ||||| |||||||| | Sbjct 212927 TTCTGGATGTTGTAATCGCTCAGTGTCCTCCCATCCTCAAGCTGCTTT--CCGGCGAAAA 212984 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | || ||||||||| | || |||||| ||||| || || || || |||||| | | Sbjct 212985 TCAACCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 213044 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | |||| || ||| || || || || || || ||||||||||| ||||| |||| Sbjct 213045 CGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 213104 Query 152095 AG 152096 || Sbjct 213105 AG 213106 >seq204 Length=319970 Score = 102 bits (112), Expect = 2e-16 Identities = 133/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974 || |||||||||||||| | || || ||||| || || ||||| |||||||| | Sbjct 82044 TTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTT--CCGGCGAAAA 81987 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | | ||||||||| | || |||||| ||||| || || || || |||||| | | Sbjct 81986 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 81927 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | |||| || ||| || ||||| || ||||| ||||||||||| ||||| |||| Sbjct 81926 CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGA 81867 Query 152095 AG 152096 || Sbjct 81866 AG 81865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153816852851157