Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201
7-04-03] 267 sequences; 47,410,550 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq184 140 2e-28
seq228 138 8e-28
seq207 111 1e-19
seq204 105 5e-18
seq193 84.2 2e-11
>seq184
Length=1511567
Score = 140 bits (154), Expect = 2e-28
Identities = 159/211 (75%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGT 44186
||||| ||| ||||| |||||| ||||||||||| ||| | | | || |||| |
Sbjct 735490 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTCCTGC-CGTCCT 735548
Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246
||| |||||||||||| ||||| | ||||||||| |||| || | ||| ||||| |||
Sbjct 735549 CCAACTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCCT 735608
Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||||| | | || ||||| | ||||||||||| | ||| || ||||
Sbjct 735609 GAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTCT 735668
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || ||||| ||||| ||||| ||||||||
Sbjct 735669 TGCCTGTGAGAGTCTTGACGAAAATTTGCAT 735699
Score = 113 bits (124), Expect = 3e-20
Identities = 148/203 (73%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || ||||| ||| ||| || ||||||||||| |||| ||| ||| | || ||
Sbjct 735947 ACGAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 736006
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| |||||||| |||||||| |||| ||| | || ||||| ||
Sbjct 736007 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGG 736066
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | |||||||||| | |||||||| | || || ||||
Sbjct 736067 ATCTTGCTCTTGACATTGT--CGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCT 736124
Query 44307 TTCCCGTGAGGGTCTTCACGAAG 44329
| || || | ||| || ||||||
Sbjct 736125 TGCCGGTCAAGGTTTTGACGAAG 736147
>seq228
Length=1254254
Score = 138 bits (152), Expect = 8e-28
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || || ||||| ||||||||||| |||| || || |||| ||
Sbjct 555804 ACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCGTCCTCG 555863
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| ||||| | |||||||| |||| ||| | ||| ||||| |||
Sbjct 555864 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATACCCTCCTTATCCTGG 555923
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|||||| ||||| | | |||||||||| ||| || ||||| | || || |||||
Sbjct 555924 ATCTTCGACTTCACGTTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTG 555983
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||||||| |||||||| |||||
Sbjct 555984 CCAGTGAGGGTCTTGACGAAGATCTGCAT 556012
Score = 136 bits (150), Expect = 3e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
|| ||||| ||| ||||| |||||| || |||||||| ||| | || ||||
Sbjct 555572 CAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTCCGGCCGTC 555631
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|||| |||||| || || ||||| | |||||||||||||| || | ||| ||||| ||
Sbjct 555632 CTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGGATACCCTCCTTATC 555691
Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
| |||||| ||||| | | || ||||| | ||||||||||| | ||| || ||
Sbjct 555692 CTGAATCTTCGACTTCACGTTGTCGATTGTGTCTGATGATTCCACCTCGAGCGTGATGGT 555751
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || ||||| ||||| ||||||||||||||
Sbjct 555752 CTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784
Score = 113 bits (124), Expect = 3e-20
Identities = 148/203 (73%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || || || ||| |||||| |||||||||||||||| ||| ||| | || ||
Sbjct 556032 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCG 556091
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| |||||||| |||||||| |||| || | || || || ||
Sbjct 556092 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGGATGCCCTCTTTGTCTTGG 556151
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | |||||||||| | |||||||| | || || ||||
Sbjct 556152 ATCTTGCTCTTGACATTGT--CGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCT 556209
Query 44307 TTCCCGTGAGGGTCTTCACGAAG 44329
| || || | |||||| ||||||
Sbjct 556210 TGCCGGTCAAGGTCTTTACGAAG 556232
Score = 93.3 bits (102), Expect = 3e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||||||||||| || |||||| ||||||||||| |||| || ||| |||| ||
Sbjct 1165055 ACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCG 1164996
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|||||||| ||||| |||||||| |||||||| || | || | ||| ||||| ||
Sbjct 1164995 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 1164940
>seq207
Length=296016
Score = 111 bits (122), Expect = 1e-19
Identities = 136/184 (74%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||||||| ||| | | | || || |||||||| ||||| || |
Sbjct 212925 CCTTCTGGATGTTGTAATCGCTCAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCGAAAA 212984
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| |||||||| |||| || | || ||||| ||| ||||| ||| || |||
Sbjct 212985 TCAACCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 213044
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | ||| || ||||| | || || ||||| |||||||||||||| ||
Sbjct 213045 --CGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 213102
Query 44326 GAAG 44329
||||
Sbjct 213103 GAAG 213106
>seq204
Length=319970
Score = 105 bits (116), Expect = 5e-18
Identities = 135/184 (73%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| |||||||||||||| ||| | | || || |||||||| ||||| || |
Sbjct 82046 CCTTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 81987
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| |||||||| |||| || | || ||||| ||| ||||| ||| || |||
Sbjct 81986 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 81927
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||||| || |||||||| | || || ||||| |||||||||||||| ||
Sbjct 81926 --CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 81869
Query 44326 GAAG 44329
||||
Sbjct 81868 GAAG 81865
>seq193
Length=432561
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 44134 GTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTG 44193
|||||| || ||| || ||||||||||| |||| ||| ||| |||| || |||||
Sbjct 90609 GTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 90668
Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
||| ||||| |||||||| |||||||| || | || | ||| ||||| ||
Sbjct 90669 CTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 90719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359989228568739
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |