Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq184 147 2e-30 seq228 129 5e-25 seq193 107 2e-18 seq204 86.0 6e-12 >seq184 Length=1511567 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || || || || || ||||||||| |||||||||||||| Sbjct 735701 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCGGAA 735760 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| |||||||||||||| || |||||||||||||| | ||| Sbjct 735761 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGA 735820 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | |||||| ||||| || Sbjct 735821 ATACCCTCCTTGTCCTGGATCTTCGACTT-GACGTTGTCGATGGTGTCGGATGACTCAAC 735879 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || |||||||| ||||| |||||||| Sbjct 735880 CTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 735927 Score = 125 bits (138), Expect = 7e-24 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||| ||||| ||||| ||||||||| Sbjct 735929 CCACCACGCAGACGGAGGACGAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 735988 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||||||||| |||| |||||| ||||| | ||| Sbjct 735989 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGA 736048 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| || ||| || | || | |||||| ||||| Sbjct 736049 ATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGTCG--ATGGTGTCGGAGCTCTCCA 736106 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 |||| | || || || || || |||| || || ||||| Sbjct 736107 CCTCAAGGGTGATGGTCTTGCCGGTCAAGGTTTTGACGAA 736146 >seq228 Length=1254254 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || || || || || |||||||| ||||| |||||||| Sbjct 555786 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAA 555845 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| |||||||||||||||||||| || |||||||| ||||| | ||| Sbjct 555846 AGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGA 555905 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| || |||| ||| | | | |||||| ||||| || Sbjct 555906 ATACCCTCCTTATCCTGGATCTTCGACTTC-ACGTTGTCGATGGTGTCGGAGGACTCAAC 555964 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || || ||||| ||||| |||||||| Sbjct 555965 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 556012 Score = 125 bits (138), Expect = 7e-24 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||||||||| ||||| || |||||| Sbjct 556014 CCACCACGCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAG 556073 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||||||||| |||| |||||| ||||| | || Sbjct 556074 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGG 556133 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||| ||||| ||| || ||| || | || | |||||| ||||| Sbjct 556134 ATGCCCTCTTTGTCTTGGATCTTGCTCTTGACATTGTCG--ATGGTGTCGGAGCTCTCCA 556191 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 |||| | || || || || || |||| ||||||||||| Sbjct 556192 CCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTTACGAA 556231 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || ||||||||| ||||| |||||||| Sbjct 1165073 CCACCACGGAGGCGCAGGACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 1165014 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||||||||||||||| |||| |||||| ||||| | || Sbjct 1165013 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGG 1164954 Query 41756 ACGCTCTCCTTGTC 41769 | | ||||||||| Sbjct 1164953 ATACCCTCCTTGTC 1164940 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || | ||| | ||||| |||||||| ||||||||||||||| |||||| Sbjct 555558 CCTCCACGCAAACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 555617 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || | |||||| || ||||| || || ||||| || || | || Sbjct 555618 AACGTCCGGCCGTCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGG 555677 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||| ||| ||| | || | |||| ||| | | | ||||| || |||| Sbjct 555678 ATACCCTCCTTATCC-TGAATCTTCGACTTC-ACGTTGTCGATTGTGTCTGATGATTCCA 555735 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | ||| || || || || || || ||||| ||||| || ||||| Sbjct 555736 CCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 555784 >seq193 Length=432561 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||| Sbjct 90621 CTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 90680 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 |||| |||||| ||||| | || | | ||||||||| Sbjct 90681 GATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 90719 >seq204 Length=319970 Score = 86.0 bits (94), Expect = 6e-12 Identities = 130/183 (71%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| || || || || | | || || |||||||| |||||||| | Sbjct 82046 CCTTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 81987 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| |||||| ||||| | || | | |||||||||| ||| || ||| || | Sbjct 81986 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 81927 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 ||| |||||| |||||||||||| | || || || || ||||| || ||||| || Sbjct 81926 CGATC--GTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 81869 Query 41851 GAA 41853 ||| Sbjct 81868 GAA 81866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302457060400