Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 154 3e-32 >seq1 Length=3303888 Score = 154 bits (170), Expect = 3e-32 Identities = 304/442 (69%), Gaps = 6/442 (1%) Strand=Plus/Plus Query 230202 TGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 230261 ||| || || ||| | || || || ||| ||| ||||| ||||| ||| || Sbjct 494415 TGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGCTCAAGAAGCGCGG 494474 Query 230262 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCA 230321 ||||||| |||||| | || |||||| |||| || |||||||| | || || Sbjct 494475 GCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCCCGTGACGAGGGCATGCA-CA 494533 Query 230322 AC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCA 230380 | | |||| | | || | || | |||| ||||||| | || |||| ||| Sbjct 494534 CCGACTTCGCCTGTATGCTGCACGCACATCTCCGCAACAAGCCATCACTCGACCTTGTCC 494593 Query 230381 AACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCAT 230440 | || ||||| || ||||| || || | ||| | |||||| | | ||||| | || | Sbjct 494594 ACCAGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTCTCAGACGCCCTACCCT 494653 Query 230441 GTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGAC 230499 | ||| ||| | ||||||||||| | || ||| | ||||||||||| ||||| || ||| Sbjct 494654 G-CGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGAC 494712 Query 230500 CGCATTTTTGTTGCACTTGGTTACGAGAAAGT-GTACAACTCTAAGAACCCCTTTGCATT 230558 ||| | | | ||||| || ||| | |||| |||||| | | |||||||| | || Sbjct 494713 CGCCTACTCCTCGCACTCGGCCACG-GCAAGTACTACAACGCCACCAACCCCTTCGACTT 494771 Query 230559 TATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA 230618 |||||| ||| || || || ||||| ||||||||||| ||||| || ||||||| Sbjct 494772 CATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTA 494831 Query 230619 TCAGAGGCCTGGTGTGATGAAG 230640 |||| | ||||||| ||| || Sbjct 494832 CCAGAAGGCTGGTGTCATGGAG 494853 Score = 149 bits (164), Expect = 1e-30 Identities = 303/442 (69%), Gaps = 6/442 (1%) Strand=Plus/Plus Query 230202 TGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 230261 ||| || ||||| | || || || ||| ||||||||| |||||| ||| || Sbjct 528782 TGTCGAGGGTATCTTCTTCTCTGGCTCATTCGCCGCCATCTTCTGGCTGAAGAAGCGCGG 528841 Query 230262 TGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCA 230321 | ||||| |||||| | || |||||| ||||| || |||||||| | || || Sbjct 528842 GCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCA-CA 528900 Query 230322 AC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCA 230380 | | |||| | | || | || | |||| ||||||| | || |||| ||| Sbjct 528901 CCGACTTCGCCTGCATGCTGCACGCACATCTCCGCAACAAGCCATCACTCGACCTCGTCC 528960 Query 230381 AACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCAT 230440 | || ||||| || ||||| || || | || | |||||| | | ||||| | || | Sbjct 528961 ACCAGATCATCACGGAAGCTGTCGAGATTGAGCAAGAGTTCCTCTCGGACGCCCTGCCCT 529020 Query 230441 GTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGAC 230499 | ||| ||| | ||||||||||| | || ||| | ||||||||||| || || || || Sbjct 529021 G-CGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTGAT 529079 Query 230500 CGCATTTTTGTTGCACTTGGTTACGAGAAAGT-GTACAACTCTAAGAACCCCTTTGCATT 230558 ||| | | | |||||||| || || |||| |||||| | | |||||||| | || Sbjct 529080 CGCCTACTCCTCGCACTTGGCCAC-AGCAAGTACTACAACGCCACCAACCCCTTCGACTT 529138 Query 230559 TATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA 230618 |||||| ||| || || || ||||| ||||||||||| ||||| || ||||||| Sbjct 529139 CATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTA 529198 Query 230619 TCAGAGGCCTGGTGTGATGAAG 230640 |||| | | ||||| ||| || Sbjct 529199 CCAGAAGGCCGGTGTCATGGAG 529220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057820855618160