Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 156 4e-33 >seq1 Length=3303888 Score = 156 bits (172), Expect = 4e-33 Identities = 554/851 (65%), Gaps = 15/851 (2%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 ||||| || | ||||| || ||||| ||||| || ||||| | || || || |||||| Sbjct 494834 TGGTAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCC 494775 Query 16736 ATGAAATCAAAAGGATTAGTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAA 16794 ||||| || || || || || || | | || || || || ||| || || || Sbjct 494774 ATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCC-GTGGCCGAGTGCGAGGAGTAG 494716 Query 16795 TCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA-C 16853 | || || || || || || || |||||||| | | | |||||| || | ||| | Sbjct 494715 GCGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGC 494656 Query 16854 GTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATAC 16913 | | || || || || | | || |||||| || | || |||||| | || || | Sbjct 494655 GCAG-GGTAGGGCGTCTGAGAGGAACTCTTGCTCGATCTCGACAGCTTCCGTGATGAT-C 494598 Query 16914 TAGCA-ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAA 16972 | | || | || || || | | |||||| || || ||| ||||| Sbjct 494597 TGGTGGACAAGGTCGAGTGATGGCTTGTTGCGGAGATGTGCGTGCAGCATACAGGCGAAG 494538 Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 ||| || | |||||||| | | || || ||||| || || || | ||||||||| Sbjct 494537 TCGGTGTGCATGCCCTCGTCACGGGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATC 494478 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 || || ||||| | ||| || || ||||||||||| ||||| ||||| || |||||| Sbjct 494477 AGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCGAACGAACCAGAGAAGAAAATGCCCTCG 494418 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTC 17152 || | |||||| || || | || | || | |||| | | || | ||||| || Sbjct 494417 ACAGCTGCAAAGGCAATGAGACGGCAGCCGAAGGTCGATGCGTCGTCGCTGATCCACTTT 494358 Query 17153 TGCACCCACTCGGCTTT-TTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATT- 17210 | |||| | ||| || |||| ||||| || | || ||||| ||||| | | Sbjct 494357 AGTGCCCAGTTGGCCTTCTTGCGG-ATGCACGGGATGTTGTCGATGGCGTTAAAGAGGTA 494299 Query 17211 TCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGT 17270 | | || | | | ||| | || || || ||||||||||| ||| | ||||||| Sbjct 494298 TGTGCGTTGGC-GAGGTTCGCTGATGTAGGTGTCGATGAGTAGTGAGTAGGTCTCGGAGT 494240 Query 17271 GTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTT 17330 | || |||||||| ||||| || ||||| ||||| || || || | ||||| || | Sbjct 494239 GGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCAGGGATTTGCACCT 494180 Query 17331 CCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACG 17390 | | |||||| || | || || ||||| ||||||||||| |||||||| || | Sbjct 494179 CGCCACTGAATCGCTCGACCAGGTTCTCGTTGACGATGCCGTCTGATGCGGCGAAGAAGG 494120 Query 17391 CCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGC----GCCAGTCCTTT 17446 | | | ||| |||||| || ||||| | || |||| |||||| | Sbjct 494119 CAAGCACATGTGAAATGAAGAATCGCTCGTCATCATTGAG-ACGCTTGTTCCAGTCGTGC 494061 Query 17447 AAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATAC 17506 | |||||| || | ||| | || || | ||||| || ||| ||||||| || ||| Sbjct 494060 AGATCTTTCGACAGATCAATCTCCTCTGCTGTCCAGAATGATGCCTCTGCCTTCTTGTAC 494001 Query 17507 ATATTCCAAAT 17517 || | ||| || Sbjct 494000 ATCTGCCATAT 493990 Score = 149 bits (164), Expect = 6e-31 Identities = 555/853 (65%), Gaps = 19/853 (2%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 ||||| || | ||||| || ||||| ||||| || ||||| | || || || |||||| Sbjct 529201 TGGTAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCC 529142 Query 16736 ATGAAATCAAAAGGATTAGTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAA 16794 ||||| || || || || || || | | || || || || ||| || || || Sbjct 529141 ATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCT-GTGGCCAAGTGCGAGGAGTAG 529083 Query 16795 TCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA-C 16853 | ||| || ||||| || || || |||||||| | | | |||||| || | ||| | Sbjct 529082 GCGATCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGC 529023 Query 16854 GTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATAC 16913 | | || || || |||| | || |||||| || | || |||||| | || || | Sbjct 529022 GCAG-GGCAGGGCGTCCGAGAGGAACTCTTGCTCAATCTCGACAGCTTCCGTGATGAT-C 528965 Query 16914 TAGCA-ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAA 16972 | | || | || || || | | |||||| || || || ||||| Sbjct 528964 TGGTGGACGAGGTCGAGTGATGGCTTGTTGCGGAGATGTGCGTGCAGCATGCAGGCGAAG 528905 Query 16973 TCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC 17032 ||| || | |||||||| | | ||| || ||||| || || || | |||||||| Sbjct 528904 TCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATG 528845 Query 17033 TTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCG 17092 || || ||||| | ||| || || |||||||| || ||||| ||||| ||||||||| Sbjct 528844 AGCCCGCGCTTCTTCAGCCAGAAGATGGCGGCGAATGAGCCAGAGAAGAAGATACCCTCG 528785 Query 17093 ACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTC 17152 || | ||| || ||||| | || | || | |||| | | || | ||||| || Sbjct 528784 ACAGCTGCGAAAGCGATGAGACGGCAGCCGAAGGTCGATGCATCGTCGCTGATCCACTTG 528725 Query 17153 TGCACCCACTCGGCTTT-TTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATT- 17210 | |||| | ||| || |||| ||||| || | || ||||| || || | | Sbjct 528724 AGTGCCCAATTGGCCTTCTTGCGG-ATGCAGGGGATGTTGTCGATGGCGTTGAAGAGGTA 528666 Query 17211 TCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGT 17270 | | || | | | || | || || || ||||||||||| ||| | ||||||| Sbjct 528665 TGTGCGTTGGC-GAGGTTCACTGATGTAGGTGTCGATGAGTAGTGAGTAGGTCTCGGAGT 528607 Query 17271 GTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTT 17330 | ||||||||||| ||||| || ||||| ||||| || || || | |||||| || | Sbjct 528606 GGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCGTCGGGTATTTGGACCT 528547 Query 17331 CCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACG 17390 | | ||| || || | || || ||||| || |||||||| |||||||| || | Sbjct 528546 CACCACTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCTGATGCGGCGAAGAAGG 528487 Query 17391 CCAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTAAGAACGC----GCCAGTCCT 17444 | | | ||| |||||| || ||||| || || || |||| |||||| | Sbjct 528486 CAAGCACATGTGAAATGAAGAATCGCTCGTCATCGTTG--AG-ACGCTTGTTCCAGTCGT 528430 Query 17445 TTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTAT 17504 | ||| || || | || | || || | ||||| || ||| ||||||| || | Sbjct 528429 GCAGATCCTTCGACAGGTCGATCTCCTCTGCTGTCCAGAATGATGCCTCTGCCTTCTTGT 528370 Query 17505 ACATATTCCAAAT 17517 |||| | ||| || Sbjct 528369 ACATCTGCCATAT 528357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544099117760