Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045.
2_202017-04-03] 232 sequences; 44,765,267 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 4e-28
seq23 98.7 1e-15
>seq2
Length=2712501
Score = 140 bits (154), Expect = 4e-28
Identities = 174/236 (74%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008
|||| || ||||| | || ||||| |||||| |||| || |||||| || || ||||
Sbjct 1333693 CCTACTGCCCTCCACGTAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGT 1333634
Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068
| || || ||||| | || || | ||||||||||||||| || || ||||||||||
Sbjct 1333633 AGTCGCTCAACGTCCGGCCATCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGGT 1333574
Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTC 43127
| | || | | |||||||||| ||| || || | ||| | | | |||||||
Sbjct 1333573 CTGGTGGGATACCCTCCTTGTCCTGGATCTTCGACTTCA-CGTTGTCGATCGTGTCGGAT 1333515
Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| || |||| ||||||||| ||||| || || ||||| || |||||||||||
Sbjct 1333514 GATTCTACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 1333459
Score = 122 bits (134), Expect = 1e-22
Identities = 169/234 (72%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010
|| || ||||| | | ||| | |||||| |||| || |||||| || || ||||||
Sbjct 1305859 TACTGCCCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAA 1305800
Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070
|| || |||| |||| || | |||||| |||||||| ||||| |||||||||||
Sbjct 1305799 TCGCTCAAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCT 1305740
Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129
| || | | |||||| ||| ||| | || | | ||| | | | |||||| ||
Sbjct 1305739 GGTGGGATACCCTCCTTATCC-TGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGA 1305681
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||||| |||| ||||||||| ||||| || || ||||| || || ||||||||
Sbjct 1305680 TTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1305627
Score = 122 bits (134), Expect = 1e-22
Identities = 169/234 (72%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010
|| || ||||| | | ||| | |||||| |||| || |||||| || || ||||||
Sbjct 1361986 TACTGCCCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAA 1361927
Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070
|| || |||| |||| || | |||||| |||||||| ||||| |||||||||||
Sbjct 1361926 TCGCTCAAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCT 1361867
Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129
| || | | |||||| ||| ||| | || | | ||| | | | |||||| ||
Sbjct 1361866 GGTGGGATACCCTCCTTATCC-TGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGA 1361808
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||||| |||| ||||||||| ||||| || || ||||| || || ||||||||
Sbjct 1361807 TTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1361754
Score = 122 bits (134), Expect = 1e-22
Identities = 169/234 (72%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010
|| || ||||| | | ||| | |||||| |||| || |||||| || || ||||||
Sbjct 1459511 TACTGCCCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAA 1459452
Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070
|| || |||| |||| || | |||||| |||||||| ||||| |||||||||||
Sbjct 1459451 TCGCTCAAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCT 1459392
Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129
| || | | |||||| ||| ||| | || | | ||| | | | |||||| ||
Sbjct 1459391 GGTGGGATACCCTCCTTATCC-TGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGA 1459333
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||||| |||| ||||||||| ||||| || || ||||| || || ||||||||
Sbjct 1459332 TTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1459279
Score = 113 bits (124), Expect = 5e-20
Identities = 143/194 (74%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | ||||| || |||| || || ||||| || |||||
Sbjct 1333422 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 1333363
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 1333362 AATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 1333304
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || || || |||| |||||||| ||||| || || ||||| |
Sbjct 1333303 TGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGA 1333244
Query 43171 CAAAGATTTGCATT 43184
| ||||| ||||||
Sbjct 1333243 CGAAGATCTGCATT 1333230
>seq23
Length=594546
Score = 98.7 bits (108), Expect = 1e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||||||| ||| |||| | || || |||||||| || ||||| |
Sbjct 495720 CCTTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 495779
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| | ||||||||||| | ||| | | |||||||||| ||| || |||| |
Sbjct 495780 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 495839
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | ||||||| ||| ||||| || | ||||| || |||||||| || ||||| || |
Sbjct 495840 CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGA 495899
Query 43174 AG 43175
||
Sbjct 495900 AG 495901
Score = 95.1 bits (104), Expect = 1e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||||| | ||| |||| | || || |||||||| || ||||| |
Sbjct 438875 CCTTCTGGATGTTGTAATTACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 438934
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| | ||||||||||| | ||| | | |||||||||| ||| || |||| |
Sbjct 438935 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 438994
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | ||||||| ||| ||||| || | ||||| || |||||||| || ||||| || |
Sbjct 438995 CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGA 439054
Query 43174 AG 43175
||
Sbjct 439055 AG 439056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571815941728960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |