Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 228 7e-55 seq2 140 3e-28 seq23 86.0 6e-12 >seq1 Length=3303888 Score = 228 bits (252), Expect = 7e-55 Identities = 554/832 (67%), Gaps = 13/832 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| |||||||| ||||| || ||||| | || || | |||||| Sbjct 528357 ATATGGCAGATGTACAAGAAGGCAGAGGCATCATTCTGGACAGCAGAGGAGATCGACCTG 528416 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||||||| ||| ||| | | |||| || ||| || || ||| | Sbjct 528417 TCGAAGGATCTGCACGACTGGAACAAGCGTCTCAACGATGACGAGCGATTCTTCATTTCA 528476 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || ||| | || || ||||||||||| || || ||||| |||||||| ||||||| | Sbjct 528477 CATGTGCTTGCCTTCTTCGCCGCATCAGACGGCATTGTCAACGAGAACCTGGTCGAGCGC 528536 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || ||| | | || || | ||||| ||||| || || | || Sbjct 528537 TTCAGTGGTGAGGTCCAAATACCCGACGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 528596 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA-CAACGA 57865 || ||| | || || || | || || ||||||||||| || ||| | | || | || Sbjct 528597 GAGAACATCCACTCCGAGACCTACTCACTACTCATCGACACCTACATCAGTGAACCTCGC 528656 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 | | || || || |||||||| ||||| | || ||| ||| ||||||||| | Sbjct 528657 CAACGCACATAC-CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCAA 528715 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTT 57985 ||| || |||| ||||| | || | | || |||| | | || ||||| || Sbjct 528716 TTGGGCACTCAAGTGGATCAGCGACGATGCATCGACCTTCGGCTGCCGTCTCATCGCTTT 528775 Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAA 58045 ||| || ||||| ||||| ||||| || ||| || || || || || ||| ||||||| Sbjct 528776 CGCAGCTGTCGAGGGTATCTTCTTCTCTGGCTCATTCGCCGCCATCTTCTGGCTGAAGAA 528835 Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105 ||||| || ||||||||||| || || ||||||| | || || || |||||||| | Sbjct 528836 GCGCGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 528895 Query 58106 CCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCG 58165 || || || || || ||| | || || | || | ||| || || | | || | Sbjct 528896 GCACACCGACTTCGCCTGCATGCTGCACGCACATCTCCGCAACAAGCCATCACTCGACCT 528955 Query 58166 CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCT 58225 | || | || ||||| || || |||| ||| || | ||||| || | || ||||| Sbjct 528956 CGTCCACCAGATCATCACGGAAGCTGTCGAGATTGAGCAAGAGTTCCTCTCGGACGCCCT 529015 Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285 || || | ||||| |||||| | | |||| ||||||| |||||||| || Sbjct 529016 GCCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGC 529075 Query 58286 CGACAGACTTTTGCTCGAACTGATTGG--AGAGC--GTCATTACAACACGAAAAATCCGT 58341 || | || | |||| || |||| | ||| || | |||||| | | || || | Sbjct 529076 TGATCGCCTACTCCTCGCAC---TTGGCCACAGCAAGT-ACTACAACGCCACCAACCCCT 529131 Query 58342 TTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 | || || ||| | ||||| |||| |||||||| ||||| ||||| || Sbjct 529132 TCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAA 529183 Score = 192 bits (212), Expect = 5e-44 Identities = 552/839 (66%), Gaps = 15/839 (2%) Strand=Plus/Plus Query 57564 CCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 ||| | || ||| | |||||||| |||||||| ||||| || ||||| | || || | Sbjct 493984 CCACAGATATGGCAGATGTACAAGAAGGCAGAGGCATCATTCTGGACAGCAGAGGAGATT 494043 Query 57624 GACCTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTT 57680 || ||||| || |||||| ||| ||| | | |||| || ||| || || Sbjct 494044 GATCTGTCGAAAGATCTGCACGACTGGAACAAGCGTCTCAATGATGACGAGCGATTCTTC 494103 Query 57681 ATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTC 57740 ||| ||| ||| | || || ||||||||||| || || || || |||||||| ||||| Sbjct 494104 ATTTCACATGTGCTTGCCTTCTTCGCCGCATCAGACGGCATCGTCAACGAGAACCTGGTC 494163 Query 57741 GAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTG 57800 || |||| || |||||| | | ||||| | ||||| ||||| || || | Sbjct 494164 GAGCGATTCAGTGGCGAGGTGCAAATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATC 494223 Query 57801 GCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA- 57859 || || || | || || || | || || ||||||||||| || ||| | | || Sbjct 494224 ATGATGGAGAATATCCACTCCGAGACCTACTCACTACTCATCGACACCTACATCAGCGAA 494283 Query 57860 CAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCCAAGA 57918 | || | | || || || || ||||| ||||| | || |||| | ||| ||||| Sbjct 494284 CCTCGCCAACGCACATAC-CTCTTTAACGCCATCGACAACAT-CCCGTGCATCCGCAAGA 494341 Query 57919 AGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAA 57978 |||| | ||| || | || ||||| | || | | | || |||| | | || | Sbjct 494342 AGGCCAACTGGGCACTAAAGTGGATCAGCGACGACGCATCGACCTTCGGCTGCCGTCTCA 494401 Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 | || || || || ||||| || || ||||| || || || || || || || ||| Sbjct 494402 TTGCCTTTGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGC 494461 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 | ||||| ||||| |||||||||||||| || || ||||||| | || || || |||| Sbjct 494462 TCAAGAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCCCGTGACG 494521 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 |||| | || || || || || || | || || | || | ||| || || | | Sbjct 494522 AGGGCATGCACACCGACTTCGCCTGTATGCTGCACGCACATCTCCGCAACAAGCCATCAC 494581 Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218 || | || | || ||||| || || |||| |||||| | ||||| || | | Sbjct 494582 TCGACCTTGTCCACCAGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTCTCAG 494641 Query 58219 AAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGT 58278 | |||||||| || | ||||| |||||| | | |||| ||||||| |||| Sbjct 494642 ACGCCCTACCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGT 494701 Query 58279 TTGTTGCCGACAGACTTTTGCTCGAACTGATTGG--AGAGC--GTCATTACAACACGAAA 58334 | || || ||| | || | |||| || | || | || || | |||||| | | Sbjct 494702 TCGTCGCTGACCGCCTACTCCTCGCAC---TCGGCCACGGCAAGT-ACTACAACGCCACC 494757 Query 58335 AATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || || || || ||| | ||||| |||| |||||||| ||||| ||||| || Sbjct 494758 AACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAA 494816 >seq2 Length=2712501 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| |||||||| || ||||| |||| || ||| | || Sbjct 1305627 ATGCAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 1305686 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||| ||||| || | || || |||||| Sbjct 1305687 GACACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 1305746 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || |||||||| ||| | ||| |||||||||| ||| Sbjct 1305747 CAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACCTTGAGCGATTACAAC 1305806 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || |||| || Sbjct 1305807 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 1305838 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| |||||||| || ||||| |||| || ||| | || Sbjct 1361754 ATGCAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 1361813 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||| ||||| || | || || |||||| Sbjct 1361814 GACACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 1361873 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || |||||||| ||| | ||| |||||||||| ||| Sbjct 1361874 CAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACCTTGAGCGATTACAAC 1361933 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || |||| || Sbjct 1361934 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 1361965 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| |||||||| || ||||| |||| || ||| | || Sbjct 1459279 ATGCAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 1459338 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||| ||||| || | || || |||||| Sbjct 1459339 GACACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 1459398 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || |||||||| ||| | ||| |||||||||| ||| Sbjct 1459399 CAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACCTTGAGCGATTACAAC 1459458 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || |||| || Sbjct 1459459 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 1459490 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| |||||||| |||||||| || ||||| |||| || ||| | || Sbjct 1333458 CATGCAAATCTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTAGAATCATC 1333517 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || || || ||||||||| || | || || ||||| Sbjct 1333518 CGACACGATCGACAACGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCACCAGACCA 1333577 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || |||||||| || |||||||| || ||| ||||||| || || Sbjct 1333578 GCAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGGACGTTGAGCGACTACAA 1333637 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || |||| || Sbjct 1333638 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 1333670 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| |||| ||||| | ||| Sbjct 1333231 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCC 1333290 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| ||| | || || |||||| Sbjct 1333291 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAG 1333350 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| || | || ||| ||| | ||| || ||| Sbjct 1333351 CAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 1333410 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || || || || || || ||| Sbjct 1333411 ATCCAGAAGGAGTCTACGCTCCACCTCGTCCTT 1333443 >seq23 Length=594546 Score = 86.0 bits (94), Expect = 6e-12 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || ||||| || |||||| | || || || ||||||||| || Sbjct 495900 TTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACGATC 495841 Query 31262 GAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGT 31318 || | ||||| ||| || | | ||||||||| || | ||||| ||||||||||| Sbjct 495840 GACAATGTCAA---GAGCAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAGCAGCGC 495784 Query 31319 CTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAA 31378 | || ||||| || || ||| | || || | ||| |||| ||||| ||||| || Sbjct 495783 TTGATTTTCGCCGGAAAGCAGCTTGAGGATGGCAGGACACTGAGTGATTACAACATCCAG 495724 Query 31379 AA 31380 || Sbjct 495723 AA 495722 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || ||||| || |||||| | || || || ||||||||| || Sbjct 439055 TTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACGATC 438996 Query 31262 GAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGT 31318 || | ||||| ||| || | | ||||||||| || | ||||| ||||||||||| Sbjct 438995 GACAATGTCAA---GAGCAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAGCAGCGC 438939 Query 31319 CTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAA 31378 | || ||||| || || ||| | || || | ||| |||| |||| ||||| || Sbjct 438938 TTGATTTTCGCCGGAAAGCAGCTTGAGGATGGCAGGACACTGAGTAATTACAACATCCAG 438879 Query 31379 AA 31380 || Sbjct 438878 AA 438877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765107277440