Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045.
2_202017-04-03] 232 sequences; 44,765,267 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1 228 7e-55
seq2 140 3e-28
seq23 86.0 6e-12
>seq1
Length=3303888
Score = 228 bits (252), Expect = 7e-55
Identities = 554/832 (67%), Gaps = 13/832 (2%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| |||||||| ||||| || ||||| | || || | ||||||
Sbjct 528357 ATATGGCAGATGTACAAGAAGGCAGAGGCATCATTCTGGACAGCAGAGGAGATCGACCTG 528416
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| ||||||||| ||| ||| | | |||| || ||| || || ||| |
Sbjct 528417 TCGAAGGATCTGCACGACTGGAACAAGCGTCTCAACGATGACGAGCGATTCTTCATTTCA 528476
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
|| ||| | || || ||||||||||| || || ||||| |||||||| ||||||| |
Sbjct 528477 CATGTGCTTGCCTTCTTCGCCGCATCAGACGGCATTGTCAACGAGAACCTGGTCGAGCGC 528536
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| || || ||| | | || || | ||||| ||||| || || | ||
Sbjct 528537 TTCAGTGGTGAGGTCCAAATACCCGACGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 528596
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA-CAACGA 57865
|| ||| | || || || | || || ||||||||||| || ||| | | || | ||
Sbjct 528597 GAGAACATCCACTCCGAGACCTACTCACTACTCATCGACACCTACATCAGTGAACCTCGC 528656
Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925
| | || || || |||||||| ||||| | || ||| ||| ||||||||| |
Sbjct 528657 CAACGCACATAC-CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCAA 528715
Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTT 57985
||| || |||| ||||| | || | | || |||| | | || ||||| ||
Sbjct 528716 TTGGGCACTCAAGTGGATCAGCGACGATGCATCGACCTTCGGCTGCCGTCTCATCGCTTT 528775
Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAA 58045
||| || ||||| ||||| ||||| || ||| || || || || || ||| |||||||
Sbjct 528776 CGCAGCTGTCGAGGGTATCTTCTTCTCTGGCTCATTCGCCGCCATCTTCTGGCTGAAGAA 528835
Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105
||||| || ||||||||||| || || ||||||| | || || || |||||||| |
Sbjct 528836 GCGCGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 528895
Query 58106 CCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCG 58165
|| || || || || ||| | || || | || | ||| || || | | || |
Sbjct 528896 GCACACCGACTTCGCCTGCATGCTGCACGCACATCTCCGCAACAAGCCATCACTCGACCT 528955
Query 58166 CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCT 58225
| || | || ||||| || || |||| ||| || | ||||| || | || |||||
Sbjct 528956 CGTCCACCAGATCATCACGGAAGCTGTCGAGATTGAGCAAGAGTTCCTCTCGGACGCCCT 529015
Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285
|| || | ||||| |||||| | | |||| ||||||| |||||||| ||
Sbjct 529016 GCCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGC 529075
Query 58286 CGACAGACTTTTGCTCGAACTGATTGG--AGAGC--GTCATTACAACACGAAAAATCCGT 58341
|| | || | |||| || |||| | ||| || | |||||| | | || || |
Sbjct 529076 TGATCGCCTACTCCTCGCAC---TTGGCCACAGCAAGT-ACTACAACGCCACCAACCCCT 529131
Query 58342 TTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393
| || || ||| | ||||| |||| |||||||| ||||| ||||| ||
Sbjct 529132 TCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAA 529183
Score = 192 bits (212), Expect = 5e-44
Identities = 552/839 (66%), Gaps = 15/839 (2%)
Strand=Plus/Plus
Query 57564 CCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623
||| | || ||| | |||||||| |||||||| ||||| || ||||| | || || |
Sbjct 493984 CCACAGATATGGCAGATGTACAAGAAGGCAGAGGCATCATTCTGGACAGCAGAGGAGATT 494043
Query 57624 GACCTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTT 57680
|| ||||| || |||||| ||| ||| | | |||| || ||| || ||
Sbjct 494044 GATCTGTCGAAAGATCTGCACGACTGGAACAAGCGTCTCAATGATGACGAGCGATTCTTC 494103
Query 57681 ATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTC 57740
||| ||| ||| | || || ||||||||||| || || || || |||||||| |||||
Sbjct 494104 ATTTCACATGTGCTTGCCTTCTTCGCCGCATCAGACGGCATCGTCAACGAGAACCTGGTC 494163
Query 57741 GAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTG 57800
|| |||| || |||||| | | ||||| | ||||| ||||| || || |
Sbjct 494164 GAGCGATTCAGTGGCGAGGTGCAAATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATC 494223
Query 57801 GCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA- 57859
|| || || | || || || | || || ||||||||||| || ||| | | ||
Sbjct 494224 ATGATGGAGAATATCCACTCCGAGACCTACTCACTACTCATCGACACCTACATCAGCGAA 494283
Query 57860 CAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCCAAGA 57918
| || | | || || || || ||||| ||||| | || |||| | ||| |||||
Sbjct 494284 CCTCGCCAACGCACATAC-CTCTTTAACGCCATCGACAACAT-CCCGTGCATCCGCAAGA 494341
Query 57919 AGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAA 57978
|||| | ||| || | || ||||| | || | | | || |||| | | || |
Sbjct 494342 AGGCCAACTGGGCACTAAAGTGGATCAGCGACGACGCATCGACCTTCGGCTGCCGTCTCA 494401
Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038
| || || || || ||||| || || ||||| || || || || || || || |||
Sbjct 494402 TTGCCTTTGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGC 494461
Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098
| ||||| ||||| |||||||||||||| || || ||||||| | || || || ||||
Sbjct 494462 TCAAGAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCCCGTGACG 494521
Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158
|||| | || || || || || || | || || | || | ||| || || | |
Sbjct 494522 AGGGCATGCACACCGACTTCGCCTGTATGCTGCACGCACATCTCCGCAACAAGCCATCAC 494581
Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218
|| | || | || ||||| || || |||| |||||| | ||||| || | |
Sbjct 494582 TCGACCTTGTCCACCAGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTCTCAG 494641
Query 58219 AAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGT 58278
| |||||||| || | ||||| |||||| | | |||| ||||||| ||||
Sbjct 494642 ACGCCCTACCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGT 494701
Query 58279 TTGTTGCCGACAGACTTTTGCTCGAACTGATTGG--AGAGC--GTCATTACAACACGAAA 58334
| || || ||| | || | |||| || | || | || || | |||||| | |
Sbjct 494702 TCGTCGCTGACCGCCTACTCCTCGCAC---TCGGCCACGGCAAGT-ACTACAACGCCACC 494757
Query 58335 AATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393
|| || || || || ||| | ||||| |||| |||||||| ||||| ||||| ||
Sbjct 494758 AACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAA 494816
>seq2
Length=2712501
Score = 140 bits (154), Expect = 3e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| |||||||| || ||||| |||| || ||| | ||
Sbjct 1305627 ATGCAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 1305686
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || || ||| ||||| || | || || ||||||
Sbjct 1305687 GACACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 1305746
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || |||||||| || |||||||| ||| | ||| |||||||||| |||
Sbjct 1305747 CAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACCTTGAGCGATTACAAC 1305806
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || || ||||| || || |||| ||
Sbjct 1305807 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 1305838
Score = 140 bits (154), Expect = 3e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| |||||||| || ||||| |||| || ||| | ||
Sbjct 1361754 ATGCAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 1361813
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || || ||| ||||| || | || || ||||||
Sbjct 1361814 GACACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 1361873
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || |||||||| || |||||||| ||| | ||| |||||||||| |||
Sbjct 1361874 CAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACCTTGAGCGATTACAAC 1361933
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || || ||||| || || |||| ||
Sbjct 1361934 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 1361965
Score = 140 bits (154), Expect = 3e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| |||||||| || ||||| |||| || ||| | ||
Sbjct 1459279 ATGCAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 1459338
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || || ||| ||||| || | || || ||||||
Sbjct 1459339 GACACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 1459398
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || |||||||| || |||||||| ||| | ||| |||||||||| |||
Sbjct 1459399 CAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACCTTGAGCGATTACAAC 1459458
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || || ||||| || || |||| ||
Sbjct 1459459 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 1459490
Score = 132 bits (146), Expect = 4e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| |||||||| |||||||| || ||||| |||| || ||| | ||
Sbjct 1333458 CATGCAAATCTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTAGAATCATC 1333517
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| |||| | || || || || ||||||||| || | || || |||||
Sbjct 1333518 CGACACGATCGACAACGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCACCAGACCA 1333577
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||||| || |||||||| || |||||||| || ||| ||||||| || ||
Sbjct 1333578 GCAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGGACGTTGAGCGACTACAA 1333637
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || ||||| || || |||| ||
Sbjct 1333638 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 1333670
Score = 100 bits (110), Expect = 3e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || ||||| || |||||| |||| ||||| | |||
Sbjct 1333231 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCC 1333290
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| || || ||||||||| ||| | || || ||||||
Sbjct 1333291 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAG 1333350
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || ||||| ||||| || | || ||| ||| | ||| || |||
Sbjct 1333351 CAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 1333410
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
|| || || || || || || || || || |||
Sbjct 1333411 ATCCAGAAGGAGTCTACGCTCCACCTCGTCCTT 1333443
>seq23
Length=594546
Score = 86.0 bits (94), Expect = 6e-12
Identities = 130/182 (71%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261
||||| ||||| || || ||||| || |||||| | || || || ||||||||| ||
Sbjct 495900 TTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACGATC 495841
Query 31262 GAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGT 31318
|| | ||||| ||| || | | ||||||||| || | ||||| |||||||||||
Sbjct 495840 GACAATGTCAA---GAGCAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAGCAGCGC 495784
Query 31319 CTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAA 31378
| || ||||| || || ||| | || || | ||| |||| ||||| ||||| ||
Sbjct 495783 TTGATTTTCGCCGGAAAGCAGCTTGAGGATGGCAGGACACTGAGTGATTACAACATCCAG 495724
Query 31379 AA 31380
||
Sbjct 495723 AA 495722
Score = 82.4 bits (90), Expect = 7e-11
Identities = 129/182 (71%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261
||||| ||||| || || ||||| || |||||| | || || || ||||||||| ||
Sbjct 439055 TTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACGATC 438996
Query 31262 GAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGT 31318
|| | ||||| ||| || | | ||||||||| || | ||||| |||||||||||
Sbjct 438995 GACAATGTCAA---GAGCAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAGCAGCGC 438939
Query 31319 CTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAA 31378
| || ||||| || || ||| | || || | ||| |||| |||| ||||| ||
Sbjct 438938 TTGATTTTCGCCGGAAAGCAGCTTGAGGATGGCAGGACACTGAGTAATTACAACATCCAG 438879
Query 31379 AA 31380
||
Sbjct 438878 AA 438877
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765107277440
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