Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 113 9e-20 >seq1 Length=3303888 Score = 113 bits (124), Expect = 9e-20 Identities = 313/477 (66%), Gaps = 5/477 (1%) Strand=Plus/Plus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 || || || || || || || |||||||| ||| ||||||| |||| |||||| | Sbjct 528771 GCTTTCGCAGCTGTCGAGGGTATCTTCTTCTCTGGCTCATTCGCCGCCATCTTCTGGCTG 528830 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | || | |||| || ||||||| |||||| ||| |||| || | ||||| Sbjct 528831 AAGAAGCGCGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAG 528890 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCA 102100 || | || |||||| || ||||||||| | | | | | | |||||| Sbjct 528891 GGCATGCACACCGACTTCGCCTGCATGCTGCACGCACA---TCTCCGCAACAAGCCATCA 528947 Query 102101 AGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCACA 102160 || | | | || |||| ||||| ||| ||||| ||||| || ||| | Sbjct 528948 CTCGACCTCGTCCACCAGATCATCACGGAAGCTGTCGAGATTGAGCAAGAGTTCCTCTCG 529007 Query 102161 GTTTCCCTGCC-TGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGA 102219 | ||||||| || | || | || |||||| |||| | ||| |||||||||| || Sbjct 529008 GACGCCCTGCCCTGCGCACTTC-TCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGA 529066 Query 102220 ATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCAA 102279 ||||| || ||| ||| | | | | | || | ||| |||| || | ||||| Sbjct 529067 GTTTGTCGCTGATCGCCTACTCCTCGCACTTGGCCACAGCAAGTACTACAACGCCACCAA 529126 Query 102280 CCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGAG 102339 ||||||| |||||||| || || ||||||| ||||| ||||| || || ||| | Sbjct 529127 CCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCG 529186 Query 102340 AGTCGCCGAGTATCAACGTGCCCAGGTCATGGCTTCTATCAATAAGATCAAGAAGGA 102396 || | || || || ||| ||||||| || |||||||| ||||| || Sbjct 529187 CGTAGGTGACTACCAGAAGGCCGGTGTCATGGAGTCGCACAATAAGAAGAAGAACGA 529243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989581058461560