Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 >seq1 Length=3303888 Score = 131 bits (144), Expect = 2e-25 Identities = 369/564 (65%), Gaps = 6/564 (1%) Strand=Plus/Minus Query 33575 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAA 33634 || || ||| ||||| ||| ||||| |||||||| | ||| | ||||| || || Sbjct 494553 CAGCATACAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAAATGAGCTCGTTGGAGAA 494494 Query 33635 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGA 33694 ||||| |||||||| || || ||||| || ||||| || || | ||||| || || || Sbjct 494493 GGTGAGGCCGGGCATCAGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCGAACGAACCAGA 494434 Query 33695 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC-TCTCTCCATAACCG--GCGCT 33751 ||||| || || || || || ||||||||||| || | | | | || ||| Sbjct 494433 GAAGAAAATGCCCTCGACAGCTGCAAAGGCAATGAGACGGCAGCCGAAGGTCGATGCGTC 494374 Query 33752 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 ||| ||||||||| | ||||| | ||||||||| | || || || | || || Sbjct 494373 GTCGCTGATCCACTTTAGTGCCCAGTTGGCCTTCTTGCGGATGCACGGGATGTTGTCGAT 494314 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33871 ||| |||||||| || | || | || | | || || ||||| | || Sbjct 494313 GGCGTTAAAGAGGTATGTGCGTTGGCGAGGTTCGCTGATGTAGGTGTCGATGAGTAGTGA 494254 Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 || | || || || || || || || ||||| || |||||||| || | |||||| Sbjct 494253 GTAGGTCTCGGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTC 494194 Query 33932 GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 | || ||||| || || ||||| || | | || || || || || || || Sbjct 494193 AGGGATTTGCACCTCGCCACTGAATCGCTCGACCAGGTTCTCGTTGACGATGCCGTCTGA 494134 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTT 34048 || || || || || | |||||| || || || ||||| | | | || Sbjct 494133 TGCGGCGAAGAAGGCAAGCACATGTGAAATGAAGAATCGCTCGTCATCATTGAGACGCTT 494074 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 ||||| || | | |||||| || | ||| | || || ||||||| ||||||||||| Sbjct 494073 GTTCCAGTCGTGCAGATCTTTCGACAGATCAATCTCCTCTGCTGTCCAGAATGATGCCTC 494014 Query 34109 TGCCTTTTTATACATATTCCAGAT 34132 |||||| || ||||| | ||| || Sbjct 494013 TGCCTTCTTGTACATCTGCCATAT 493990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815773528960