Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 4e-14 seq1 89.7 5e-13 >seq2 Length=2712501 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || ||||| || ||| | |||| || |||||||| Sbjct 1305373 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGC 1305314 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||||| || ||||| || ||||| ||||| || ||||| ||| || Sbjct 1305313 TTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTG 1305254 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| | ||||||||||| ||| | |||||||||||| Sbjct 1305253 CTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTC 1305194 Query 139742 AACGTTTTTACGAA 139755 || ||||| ||||| Sbjct 1305193 AAGGTTTTGACGAA 1305180 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || ||||| || ||| | |||| || |||||||| Sbjct 1333205 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGC 1333146 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||||| || ||||| || ||||| ||||| || ||||| ||| || Sbjct 1333145 TTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTG 1333086 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| | ||||||||||| ||| | |||||||||||| Sbjct 1333085 CTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTC 1333026 Query 139742 AACGTTTTTACGAA 139755 || || |||||||| Sbjct 1333025 AAGGTCTTTACGAA 1333012 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || ||||| || ||| | |||| || |||||||| Sbjct 1361500 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGC 1361441 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||||| || ||||| || ||||| ||||| || ||||| ||| || Sbjct 1361440 TTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTG 1361381 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| | ||||||||||| ||| | |||||||||||| Sbjct 1361380 CTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTC 1361321 Query 139742 AACGTTTTTACGAA 139755 || ||||| ||||| Sbjct 1361320 AAGGTTTTGACGAA 1361307 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || ||||| || ||| | |||| || |||||||| Sbjct 1459025 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGC 1458966 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||||| || ||||| || ||||| ||||| || ||||| ||| || Sbjct 1458965 TTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTG 1458906 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| | ||||||||||| ||| | |||||||||||| Sbjct 1458905 CTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTC 1458846 Query 139742 AACGTTTTTACGAA 139755 || ||||| ||||| Sbjct 1458845 AAGGTTTTGACGAA 1458832 >seq1 Length=3303888 Score = 89.7 bits (98), Expect = 5e-13 Identities = 344/533 (65%), Gaps = 13/533 (2%) Strand=Plus/Plus Query 52534 AACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATC 52593 ||||| | ||||| | ||||| | ||||| |||| | |||||| | || |||||| Sbjct 494308 AACGCCATCGACAACATCCCGTGCATCCGCAAGAAGGCCAACTGGGCACTAAAGTGGATC 494367 Query 52594 GAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTG 52653 ||||| | | || || | | ||||| | || ||||| || || || | Sbjct 494368 AGCGACGACGCATCGACCTTCGGCTGCCGTCTCATTGCCTTTGCAGCTGTCGAGGGCATT 494427 Query 52654 tttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGG 52712 || || || ||| || || || || || | |||| || | |||| | |||||||| Sbjct 494428 TTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGCTCAAGAAGCGCGGGC-TGATGCCCGG 494486 Query 52713 CCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772 |||||| || ||||||| | || || || ||||| || |||||||| || || || || Sbjct 494487 CCTCACCTTCTCCAACGAGCTCATTTCCCGTGACGAGGGCATGCACACCGACTTCGCCTG 494546 Query 52773 TTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGAC---AT 52829 | || | ||| | | | || | | ||| | || | || || Sbjct 494547 TATGCTGCA-----CGCACATCTCCGCAACAA-GCCATCACTCGACCTTGTCCACCAGAT 494600 Query 52830 GTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATT 52889 | | || || ||||| || || ||||||| | | ||||| ||||| || | Sbjct 494601 CATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTCTCAGACGCCCTACCCTGCGCACT 494660 Query 52890 GTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTT 52949 | ||||||||||| | | |||||| ||||||||||||| || || ||| | || | Sbjct 494661 TCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTACT 494720 Query 52950 GAT-GCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACA 53008 | ||| ||||| || || ||||| || || |||||||| || ||| | | Sbjct 494721 CCTCGCA-CTCGGCCACGGCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGA 494779 Query 53009 ACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 |||| || |||| ||||| || ||||| ||||||| || || || || ||| Sbjct 494780 ACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTAC 494832 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 || || ||||| ||||| ||||||| | ||||||| | ||| || | | ||| Sbjct 528975 GAAGCTGTCGAGATTGAGCAAGAGTTCCTCTCGGACGCCCTGCCCTGCGCACTTCTCGGC 529034 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGAT-GCA 52955 |||||||| | | |||||| |||||||||||||||| || || | || | | ||| Sbjct 529035 ATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTGATCGCCTACTCCTCGCA 529094 Query 52956 GCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATC 53015 || || || || ||||| || || |||||||| || ||| | ||||| || Sbjct 529095 -CTTGGCCACAGCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTC 529153 Query 53016 GCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 |||| ||||| || ||||| ||||||| || || || || ||| Sbjct 529154 CCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTAC 529199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062561414400