Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045.
2_202017-04-03] 232 sequences; 44,765,267 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq2 93.3 4e-14
seq1 89.7 5e-13
>seq2
Length=2712501
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| || ||||| || || ||||| || ||| | |||| || ||||||||
Sbjct 1305373 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGC 1305314
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| || || |||||| || ||||| || ||||| ||||| || ||||| ||| ||
Sbjct 1305313 TTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTG 1305254
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|| | | || | ||||||| | ||||||||||| ||| | ||||||||||||
Sbjct 1305253 CTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTC 1305194
Query 139742 AACGTTTTTACGAA 139755
|| ||||| |||||
Sbjct 1305193 AAGGTTTTGACGAA 1305180
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| || ||||| || || ||||| || ||| | |||| || ||||||||
Sbjct 1333205 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGC 1333146
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| || || |||||| || ||||| || ||||| ||||| || ||||| ||| ||
Sbjct 1333145 TTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTG 1333086
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|| | | || | ||||||| | ||||||||||| ||| | ||||||||||||
Sbjct 1333085 CTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTC 1333026
Query 139742 AACGTTTTTACGAA 139755
|| || ||||||||
Sbjct 1333025 AAGGTCTTTACGAA 1333012
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| || ||||| || || ||||| || ||| | |||| || ||||||||
Sbjct 1361500 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGC 1361441
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| || || |||||| || ||||| || ||||| ||||| || ||||| ||| ||
Sbjct 1361440 TTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTG 1361381
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|| | | || | ||||||| | ||||||||||| ||| | ||||||||||||
Sbjct 1361380 CTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTC 1361321
Query 139742 AACGTTTTTACGAA 139755
|| ||||| |||||
Sbjct 1361320 AAGGTTTTGACGAA 1361307
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| || ||||| || || ||||| || ||| | |||| || ||||||||
Sbjct 1459025 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGC 1458966
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| || || |||||| || ||||| || ||||| ||||| || ||||| ||| ||
Sbjct 1458965 TTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTG 1458906
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|| | | || | ||||||| | ||||||||||| ||| | ||||||||||||
Sbjct 1458905 CTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTC 1458846
Query 139742 AACGTTTTTACGAA 139755
|| ||||| |||||
Sbjct 1458845 AAGGTTTTGACGAA 1458832
>seq1
Length=3303888
Score = 89.7 bits (98), Expect = 5e-13
Identities = 344/533 (65%), Gaps = 13/533 (2%)
Strand=Plus/Plus
Query 52534 AACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATC 52593
||||| | ||||| | ||||| | ||||| |||| | |||||| | || ||||||
Sbjct 494308 AACGCCATCGACAACATCCCGTGCATCCGCAAGAAGGCCAACTGGGCACTAAAGTGGATC 494367
Query 52594 GAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTG 52653
||||| | | || || | | ||||| | || ||||| || || || |
Sbjct 494368 AGCGACGACGCATCGACCTTCGGCTGCCGTCTCATTGCCTTTGCAGCTGTCGAGGGCATT 494427
Query 52654 tttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGG 52712
|| || || ||| || || || || || | |||| || | |||| | ||||||||
Sbjct 494428 TTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGCTCAAGAAGCGCGGGC-TGATGCCCGG 494486
Query 52713 CCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772
|||||| || ||||||| | || || || ||||| || |||||||| || || || ||
Sbjct 494487 CCTCACCTTCTCCAACGAGCTCATTTCCCGTGACGAGGGCATGCACACCGACTTCGCCTG 494546
Query 52773 TTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGAC---AT 52829
| || | ||| | | | || | | ||| | || | || ||
Sbjct 494547 TATGCTGCA-----CGCACATCTCCGCAACAA-GCCATCACTCGACCTTGTCCACCAGAT 494600
Query 52830 GTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATT 52889
| | || || ||||| || || ||||||| | | ||||| ||||| || |
Sbjct 494601 CATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTCTCAGACGCCCTACCCTGCGCACT 494660
Query 52890 GTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTT 52949
| ||||||||||| | | |||||| ||||||||||||| || || ||| | || |
Sbjct 494661 TCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTACT 494720
Query 52950 GAT-GCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACA 53008
| ||| ||||| || || ||||| || || |||||||| || ||| | |
Sbjct 494721 CCTCGCA-CTCGGCCACGGCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGA 494779
Query 53009 ACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061
|||| || |||| ||||| || ||||| ||||||| || || || || |||
Sbjct 494780 ACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTAC 494832
Score = 86.0 bits (94), Expect = 6e-12
Identities = 156/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896
|| || ||||| ||||| ||||||| | ||||||| | ||| || | | |||
Sbjct 528975 GAAGCTGTCGAGATTGAGCAAGAGTTCCTCTCGGACGCCCTGCCCTGCGCACTTCTCGGC 529034
Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGAT-GCA 52955
|||||||| | | |||||| |||||||||||||||| || || | || | | |||
Sbjct 529035 ATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTGATCGCCTACTCCTCGCA 529094
Query 52956 GCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATC 53015
|| || || || ||||| || || |||||||| || ||| | ||||| ||
Sbjct 529095 -CTTGGCCACAGCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTC 529153
Query 53016 GCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061
|||| ||||| || ||||| ||||||| || || || || |||
Sbjct 529154 CCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTAC 529199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496062561414400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |