Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 257 2e-63 >seq1 Length=3303888 Score = 257 bits (284), Expect = 2e-63 Identities = 573/846 (68%), Gaps = 27/846 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| || || ||||| | || ||| | |||||| Sbjct 493990 ATATGGCAGATGTACAAGAAGGCAGAGGCATCATTCTGGACAGCAGAGGAGATTGATCTG 494049 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || || || ||| |||| ||| | | ||| | | ||| |||||| || || || Sbjct 494050 TCGAAAGATCTGCACGACTGGAACAAGCGTCTCAATGATGACGAGCGATTCTTCATTTCA 494109 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 || | | |||||||| |||| || || || ||||||||||| || ||| | ||| Sbjct 494110 CATGTGCTTGCCTTCTTCGCCGCATCAGACGGCATCGTCAACGAGAACCTGGTCGAGCGA 494169 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGAT 125257 ||| | ||| || || || |||| ||| ||||| ||||| ||||| |||||||| Sbjct 494170 TTCAGTGGCGAGGTGCAAATCCCTGAGG-CTCGCTGCTTCTACGGCTTCCAGATCATGAT 494228 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCC 125314 ||||| | ||||| || | ||||| ||| || |||| ||||| |||| || Sbjct 494229 GGAGAATATCCACTCCGAGACCTACTCACTACTCATCGACACCTACATCAGCGAACCTCG 494288 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 ||||| | | || ||||||||||| ||||||| | |||| || || || ||||| Sbjct 494289 CCAACGCACATAC---CTCTTTAACGCCATCGACAACATCCCGTGCATCCGCAAGAAGGC 494345 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | ||||||| |||||| || | | || | | | || | || Sbjct 494346 CAACTGGGCACTAAAGTGGATCAGCGACGACGCATCGACCTTCGGCTGCCGTCTCATTGC 494405 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 || || || || |||||||| ||||| || ||| || || || ||||| |||||||| Sbjct 494406 CTTTGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGCTCAA 494465 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 ||||||||| || |||||||| || || | |||||| | || || || |||||||| Sbjct 494466 GAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCCCGTGACGAGGG 494525 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATC 125614 | | ||| ||||| ||| | | ||| |||| |||| || | | || | | Sbjct 494526 CATGCACACCGACTTCGCCTGTATGCTG-CACGCA--CATCTCCG---CAA---CA-AGC 494575 Query 125615 CAGCGAT-GAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673 || | | || ||| | | || | || || || || ||| || |||||||| | Sbjct 494576 CATCACTCGACCTTGTCCACCAGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCC 494635 Query 125674 TAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732 | | || ||||||| | ||| | | ||||||||| |||||| |||||| ||||| Sbjct 494636 TCTCAGACGCCCTACC-CTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTAC 494694 Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCC---GCAAGATTTACAAC 125789 || ||||| || || || || ||||| || | |||| ||||| |||||| Sbjct 494695 ATCGAGTTCGTCGCTGACCGCCTACTCCTCG---CACTCGGCCACGGCAAGTACTACAAC 494751 Query 125790 GCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTC 125849 |||| || ||||| || |||||| | ||| || || | || ||||| ||||| ||| Sbjct 494752 GCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTC 494811 Query 125850 GAGAAG 125855 |||||| Sbjct 494812 GAGAAG 494817 Score = 237 bits (262), Expect = 2e-57 Identities = 571/847 (67%), Gaps = 29/847 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| || || ||||| | || ||| |||| ||| Sbjct 528357 ATATGGCAGATGTACAAGAAGGCAGAGGCATCATTCTGGACAGCAGAGGAGATCGACCTG 528416 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| ||| |||| ||| | | ||| | | || |||||| || || || Sbjct 528417 TCGAAGGATCTGCACGACTGGAACAAGCGTCTCAACGATGACGAGCGATTCTTCATTTCA 528476 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 || | | |||||||| |||| || || || || |||||||| || ||| | || Sbjct 528477 CATGTGCTTGCCTTCTTCGCCGCATCAGACGGCATTGTCAACGAGAACCTGGTCGAGCGC 528536 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGAT 125257 ||| | ||| | || || || | ||| ||||| ||||| ||||| |||||||| Sbjct 528537 TTCAGTGGTGAGGTCCAAATACCCGACGC-TCGCTGCTTCTACGGCTTCCAGATCATGAT 528595 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC- 125316 |||||| | ||||| || | ||||| ||| || |||| ||||| | || || | Sbjct 528596 GGAGAACATCCACTCCGAGACCTACTCACTACTCATCGACACCTACATCAGTGAACCTCG 528655 Query 125317 --AACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 |||| | | || ||||| ||||| ||||||| | || | || || || ||||| Sbjct 528656 CCAACGCACATAC---CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGC 528712 Query 125375 TCAATGGGTGATTCG-GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 |||| || | || ||||||| ||||| || | | || | | | || | | Sbjct 528713 -CAATTGGGCACTCAAGTGGATCAGCGACGATGCATCGACCTTCGGCTGCCGTCTCATCG 528771 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493 | ||||| || || ||||| |||||||| || || || || |||||||| ||||| | Sbjct 528772 CTTTCGCAGCTGTCGAGGGTATCTTCTTCTCTGGCTCATTCGCCGCCATCTTCTGGCTGA 528831 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 |||||||||| ||||||||||| || || | |||||| | || || || ||||||| Sbjct 528832 AGAAGCGCGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 528891 Query 125554 GCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGAT 125613 || | ||| ||||| ||| | ||| |||| |||| || | | || | Sbjct 528892 GCATGCACACCGACTTCGCCTGCATGCTG-CACGCA--CATCTCCG---CAA---CA-AG 528941 Query 125614 CCAGCGAT-GAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672 ||| | | || ||| | | || | || || || || ||| || |||||||| Sbjct 528942 CCATCACTCGACCTCGTCCACCAGATCATCACGGAAGCTGTCGAGATTGAGCAAGAGTTC 529001 Query 125673 CTAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGCTAATGTGCGAGTA 125731 || | || |||| || | ||| | | ||||||||| |||||| |||||| |||| Sbjct 529002 CTCTCGGACGCCCTGCC-CTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTA 529060 Query 125732 CATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCC---GCAAGATTTACAA 125788 ||| |||||||| || ||||| ||||| || |||||| ||||| ||||| Sbjct 529061 CATCGAGTTTGTCGCTGATCGCCTACTCCTCG---CACTTGGCCACAGCAAGTACTACAA 529117 Query 125789 CGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848 ||||| || ||||| || |||||| | ||| || || | || ||||| ||||| || Sbjct 529118 CGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTT 529177 Query 125849 CGAGAAG 125855 ||||||| Sbjct 529178 CGAGAAG 529184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057050928320