Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045.
2_202017-04-03] 232 sequences; 44,765,267 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq2 86.0 5e-12
>seq2
Length=2712501
Score = 86.0 bits (94), Expect = 5e-12
Identities = 161/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| |||| | || ||| || || || || |||||| || ||||||||||| ||
Sbjct 1305853 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATC-GCT 1305795
Query 48560 AATTGTC--GCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| ||| || ||||||||| |||||| || || | || | ||||||||| || |
Sbjct 1305794 CAAGGTCCTGC-CGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTG 1305736
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675
| | || ||||| ||| ||| ||| ||| | | | || || || || | || ||
Sbjct 1305735 GGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCG--ATCGTGTCTGATGATTC 1305678
Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| ||||| || ||||| || || |||||||| || || ||||| |||||
Sbjct 1305677 CACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1305627
Score = 86.0 bits (94), Expect = 5e-12
Identities = 161/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| |||| | || ||| || || || || |||||| || ||||||||||| ||
Sbjct 1361980 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATC-GCT 1361922
Query 48560 AATTGTC--GCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| ||| || ||||||||| |||||| || || | || | ||||||||| || |
Sbjct 1361921 CAAGGTCCTGC-CGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTG 1361863
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675
| | || ||||| ||| ||| ||| ||| | | | || || || || | || ||
Sbjct 1361862 GGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCG--ATCGTGTCTGATGATTC 1361805
Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| ||||| || ||||| || || |||||||| || || ||||| |||||
Sbjct 1361804 CACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1361754
Score = 86.0 bits (94), Expect = 5e-12
Identities = 161/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| |||| | || ||| || || || || |||||| || ||||||||||| ||
Sbjct 1459505 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATC-GCT 1459447
Query 48560 AATTGTC--GCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| ||| || ||||||||| |||||| || || | || | ||||||||| || |
Sbjct 1459446 CAAGGTCCTGC-CGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTG 1459388
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675
| | || ||||| ||| ||| ||| ||| | | | || || || || | || ||
Sbjct 1459387 GGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCG--ATCGTGTCTGATGATTC 1459330
Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| ||||| || ||||| || || |||||||| || || ||||| |||||
Sbjct 1459329 CACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1459279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421250008912232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |