Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 5e-12 >seq2 Length=2712501 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||| | || ||| || || || || |||||| || ||||||||||| || Sbjct 1305853 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATC-GCT 1305795 Query 48560 AATTGTC--GCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | ||| || ||||||||| |||||| || || | || | ||||||||| || | Sbjct 1305794 CAAGGTCCTGC-CGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTG 1305736 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | || ||||| ||| ||| ||| ||| | | | || || || || | || || Sbjct 1305735 GGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCG--ATCGTGTCTGATGATTC 1305678 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || ||||| || || |||||||| || || ||||| ||||| Sbjct 1305677 CACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1305627 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||| | || ||| || || || || |||||| || ||||||||||| || Sbjct 1361980 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATC-GCT 1361922 Query 48560 AATTGTC--GCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | ||| || ||||||||| |||||| || || | || | ||||||||| || | Sbjct 1361921 CAAGGTCCTGC-CGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTG 1361863 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | || ||||| ||| ||| ||| ||| | | | || || || || | || || Sbjct 1361862 GGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCG--ATCGTGTCTGATGATTC 1361805 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || ||||| || || |||||||| || || ||||| ||||| Sbjct 1361804 CACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1361754 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||| | || ||| || || || || |||||| || ||||||||||| || Sbjct 1459505 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATC-GCT 1459447 Query 48560 AATTGTC--GCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | ||| || ||||||||| |||||| || || | || | ||||||||| || | Sbjct 1459446 CAAGGTCCTGC-CGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTG 1459388 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | || ||||| ||| ||| ||| ||| | | | || || || || | || || Sbjct 1459387 GGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCG--ATCGTGTCTGATGATTC 1459330 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || ||||| || || |||||||| || || ||||| ||||| Sbjct 1459329 CACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1459279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250008912232