Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 >seq2 Length=2712501 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| || || ||||| || | ||| || ||||||| || | | Sbjct 1333673 CGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTCCGGCCA 1333614 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| ||| || || | ||||| | | ||||| ||||| || ||||| || ||| Sbjct 1333613 TCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGTGGGATACCCTCCTTG 1333554 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | ||| ||| | ||| ||||| | || || || | ||||||| Sbjct 1333553 TCCTGGATCTTCGACTTCACGTTGTCGATCGTGTCGGATGATTCTACCTCGAGCGTGATG 1333494 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||| || || ||||| ||||||| Sbjct 1333493 GTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCATGC 1333457 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||||| ||||| | || || | ||||||||||| || || ||||| || | ||| | Sbjct 1305861 TTTACTGCCCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGT 1305802 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||||||| || || ||||||| ||| || || | ||||| | | ||||| | Sbjct 1305801 AATCGCTCAAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGT 1305742 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || ||||| || || || | ||| || | ||| ||| | ||| ||||| | Sbjct 1305741 CTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATG 1305682 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||||||| || || || ||||| || || || || ||||| Sbjct 1305681 ATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1305627 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||||| ||||| | || || | ||||||||||| || || ||||| || | ||| | Sbjct 1361988 TTTACTGCCCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGT 1361929 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||||||| || || ||||||| ||| || || | ||||| | | ||||| | Sbjct 1361928 AATCGCTCAAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGT 1361869 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || ||||| || || || | ||| || | ||| ||| | ||| ||||| | Sbjct 1361868 CTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATG 1361809 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||||||| || || || ||||| || || || || ||||| Sbjct 1361808 ATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1361754 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||||| ||||| | || || | ||||||||||| || || ||||| || | ||| | Sbjct 1459513 TTTACTGCCCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGT 1459454 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||||||| || || ||||||| ||| || || | ||||| | | ||||| | Sbjct 1459453 AATCGCTCAAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGT 1459394 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || ||||| || || || | ||| || | ||| ||| | ||| ||||| | Sbjct 1459393 CTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATG 1459334 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||||||| || || || ||||| || || || || ||||| Sbjct 1459333 ATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1459279 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||| ||||| || | ||| || ||| | |||| | ||||| || || || ||| Sbjct 1333427 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCG 1333368 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | || || | | ||||| ||||||||||| || || ||||| | || || | |||| Sbjct 1333367 GCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTG 1333308 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||| | | || || || | |||||||| || ||||| || || Sbjct 1333307 ACGTTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 1333248 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 1333247 TTGACGAAGATCTGCAT 1333231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289899955520