Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq29 104 4e-18 seq6 100 4e-17 >seq29 Length=482220 Score = 104 bits (114), Expect = 4e-18 Identities = 84/99 (85%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||||| ||||| | || || |||||||| || ||||||||||| || || Sbjct 229944 GCCAAGCGTCATCGCAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCGAT 229886 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || |||||||| || ||||||||| |||| Sbjct 229885 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGTATCTC 229847 Score = 91.5 bits (100), Expect = 2e-14 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | |||| | |||| ||||||| || || || | || | Sbjct 229785 TGATCTACGAGGAGACCCGCGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATTCGCGACG 229726 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| ||||||||| | || ||||||| | Sbjct 229725 CAGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCCCTCGACGTCGTCTACG 229666 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 || | || ||||||||||| | | || ||||| || |||| Sbjct 229665 CACTCAAGCGTCAAGGCCGCACCCTGTACGGTTTCGGCGGTTA 229623 >seq6 Length=1760288 Score = 100 bits (110), Expect = 4e-17 Identities = 83/99 (84%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||||| | || || |||||||| || ||||||||||| || || Sbjct 398316 GCCAAGCGTCACCGCAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCGAT 398258 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || |||||||| || ||||||||| |||| Sbjct 398257 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGTATCTC 398219 Score = 91.5 bits (100), Expect = 2e-14 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | ||| | |||| ||||||| || || |||| || | Sbjct 398157 TGATCTACGAGGAGACCCGCGGCGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGCGACG 398098 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| ||||||||| | || ||||||| | Sbjct 398097 CAGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCCCTCGACGTCGTCTACG 398038 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 || | || ||||||||||| | | || ||||| || |||| Sbjct 398037 CACTCAAGCGTCAAGGCCGCACTCTGTACGGTTTCGGCGGTTA 397995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074987880776