Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045.
2_202017-04-03] 232 sequences; 44,765,267 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq29 104 4e-18
seq6 100 4e-17
>seq29
Length=482220
Score = 104 bits (114), Expect = 4e-18
Identities = 84/99 (85%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||||||||||| ||||| | || || |||||||| || ||||||||||| || ||
Sbjct 229944 GCCAAGCGTCATCGCAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCGAT 229886
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
||||||||| || |||||||| || ||||||||| ||||
Sbjct 229885 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGTATCTC 229847
Score = 91.5 bits (100), Expect = 2e-14
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| || | |||| | |||| ||||||| || || || | || |
Sbjct 229785 TGATCTACGAGGAGACCCGCGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATTCGCGACG 229726
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| ||||||||||| || || ||||| ||||||||| | || ||||||| |
Sbjct 229725 CAGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCCCTCGACGTCGTCTACG 229666
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
|| | || ||||||||||| | | || ||||| || ||||
Sbjct 229665 CACTCAAGCGTCAAGGCCGCACCCTGTACGGTTTCGGCGGTTA 229623
>seq6
Length=1760288
Score = 100 bits (110), Expect = 4e-17
Identities = 83/99 (84%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||||| | || || |||||||| || ||||||||||| || ||
Sbjct 398316 GCCAAGCGTCACCGCAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCGAT 398258
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
||||||||| || |||||||| || ||||||||| ||||
Sbjct 398257 CCGTCGTCTCGCACGTCGTGGCGGTGTCAAGCGTATCTC 398219
Score = 91.5 bits (100), Expect = 2e-14
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| || | ||| | |||| ||||||| || || |||| || |
Sbjct 398157 TGATCTACGAGGAGACCCGCGGCGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGCGACG 398098
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| ||||||||||| || || ||||| ||||||||| | || ||||||| |
Sbjct 398097 CAGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCCCTCGACGTCGTCTACG 398038
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
|| | || ||||||||||| | | || ||||| || ||||
Sbjct 398037 CACTCAAGCGTCAAGGCCGCACTCTGTACGGTTTCGGCGGTTA 397995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074987880776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |