Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 149 8e-31 >seq1 Length=3303888 Score = 149 bits (164), Expect = 8e-31 Identities = 373/564 (66%), Gaps = 6/564 (1%) Strand=Plus/Minus Query 33297 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 33356 || || ||| ||||| ||| ||||| |||||||| | ||| || |||||||| || Sbjct 494553 CAGCATACAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAAATGAGCTCGTTGGAGAA 494494 Query 33357 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGA 33416 ||||| |||||||| || || ||||| || ||||| || || | ||||| || ||||| Sbjct 494493 GGTGAGGCCGGGCATCAGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCGAACGAACCAGA 494434 Query 33417 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC-TCTCTCCATAACCG--GCGCT 33473 ||||| || || || || || ||||||||||| || | | | | || ||| Sbjct 494433 GAAGAAAATGCCCTCGACAGCTGCAAAGGCAATGAGACGGCAGCCGAAGGTCGATGCGTC 494374 Query 33474 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 ||| ||||||||| | ||||| | ||||||||| | || || || | || || Sbjct 494373 GTCGCTGATCCACTTTAGTGCCCAGTTGGCCTTCTTGCGGATGCACGGGATGTTGTCGAT 494314 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33593 ||| |||||||| || | || | || | | || || ||||| | || Sbjct 494313 GGCGTTAAAGAGGTATGTGCGTTGGCGAGGTTCGCTGATGTAGGTGTCGATGAGTAGTGA 494254 Query 33594 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 || | || || || || || || || ||||| || |||||||| || | |||||| Sbjct 494253 GTAGGTCTCGGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTC 494194 Query 33654 GGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACT 33713 | || || || || || ||||| || ||| || || || || || ||||| Sbjct 494193 AGGGATTTGCACCTCGCCACTGAATCGCTCGACCAGGTTCTCGTTGACGATGCCGTCTGA 494134 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTT 33770 || || || || || | |||||| || || || ||||| | | | || Sbjct 494133 TGCGGCGAAGAAGGCAAGCACATGTGAAATGAAGAATCGCTCGTCATCATTGAGACGCTT 494074 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 ||||| || | | |||||| || | ||| | || || ||||||| ||||||||||| Sbjct 494073 GTTCCAGTCGTGCAGATCTTTCGACAGATCAATCTCCTCTGCTGTCCAGAATGATGCCTC 494014 Query 33831 TGCCTTTTTATACATGTTCCAGAT 33854 |||||| || ||||| | ||| || Sbjct 494013 TGCCTTCTTGTACATCTGCCATAT 493990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945393453120