Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2 102 7e-17 >seq2 Length=2712501 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||| |||||||| || ||||||||||||| | || | ||||||| | ||| Sbjct 1333433 TGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGC 1333374 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| || ||||| ||||| ||| | |||||| ||||| || | | Sbjct 1333373 TTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTC 1333314 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| || ||| || | ||||||||| || || || Sbjct 1333313 GACTTGACGTTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTG 1333254 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 || || ||||| || ||||||||| Sbjct 1333253 AGGGTCTTGACGAAGATCTGCATT 1333230 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||||| | || | ||||||| | ||| Sbjct 1305601 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGC 1305542 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| || ||||||||||| ||| | |||||| ||||| || | | Sbjct 1305541 TTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTC 1305482 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | ||| || | ||||||||| || ||||| Sbjct 1305481 GACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTG 1305422 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 1305421 AGGGTCTTGACGAAGATCTGCAT 1305399 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||||| | || | ||||||| | ||| Sbjct 1361728 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGC 1361669 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| || ||||||||||| ||| | |||||| ||||| || | | Sbjct 1361668 TTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTC 1361609 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | ||| || | ||||||||| || ||||| Sbjct 1361608 GACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTG 1361549 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 1361548 AGGGTCTTGACGAAGATCTGCAT 1361526 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||||| | || | ||||||| | ||| Sbjct 1459253 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGC 1459194 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| || ||||||||||| ||| | |||||| ||||| || | | Sbjct 1459193 TTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTC 1459134 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | ||| || | ||||||||| || ||||| Sbjct 1459133 GACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTG 1459074 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 1459073 AGGGTCTTGACGAAGATCTGCAT 1459051 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| ||||| | ||| |||| |||||||| |||||||| || |||||||||||| Sbjct 1333686 CCCTCCACGTAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 1333627 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | |||||||| || || || || | ||||| ||||| ||||| || Sbjct 1333626 CAACGTCCGGCCATCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGTGG 1333567 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| || | | |||||| | | | | |||||| | || Sbjct 1333566 GATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATCGTGTCGGATGATTCTAC 1333507 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || || || || ||||| || || ||||| Sbjct 1333506 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 1333459 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || ||||||||||||| | ||| | | ||| Sbjct 1305382 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1305323 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| || | || | ||||| ||||| ||| | |||||| ||||| Sbjct 1305322 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1305263 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | ||||| ||| || | | | | |||||| | |||| || | ||||||||| Sbjct 1305262 TGGATCTTGCT-CTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGT 1305204 Query 16903 TTTTCCGGTCAGCGTTTTGACAAA 16926 || ||||||| |||||||| || Sbjct 1305203 CTTGCCGGTCAAGGTTTTGACGAA 1305180 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || ||||||||||||| | ||| | | ||| Sbjct 1361509 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1361450 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| || | || | ||||| ||||| ||| | |||||| ||||| Sbjct 1361449 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1361390 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | ||||| ||| || | | | | |||||| | |||| || | ||||||||| Sbjct 1361389 TGGATCTTGCT-CTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGT 1361331 Query 16903 TTTTCCGGTCAGCGTTTTGACAAA 16926 || ||||||| |||||||| || Sbjct 1361330 CTTGCCGGTCAAGGTTTTGACGAA 1361307 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || ||||||||||||| | ||| | | ||| Sbjct 1459034 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1458975 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| || | || | ||||| ||||| ||| | |||||| ||||| Sbjct 1458974 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1458915 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | ||||| ||| || | | | | |||||| | |||| || | ||||||||| Sbjct 1458914 TGGATCTTGCT-CTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGT 1458856 Query 16903 TTTTCCGGTCAGCGTTTTGACAAA 16926 || ||||||| |||||||| || Sbjct 1458855 CTTGCCGGTCAAGGTTTTGACGAA 1458832 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || ||||||||||||| | ||| | | ||| Sbjct 1333214 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1333155 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| || | || | ||||| ||||| ||| | |||||| ||||| Sbjct 1333154 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1333095 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | ||||| ||| || | | | | |||||| | |||| || | ||||||||| Sbjct 1333094 TGGATCTTGCT-CTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGT 1333036 Query 16903 TTTTCCGGTCAGCGTTTTGACAAA 16926 || ||||||| || || || || Sbjct 1333035 CTTGCCGGTCAAGGTCTTTACGAA 1333012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405086854613680