Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2 136 3e-27 >seq2 Length=2712501 Score = 136 bits (150), Expect = 3e-27 Identities = 206/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 6192 GCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGA 6251 ||||| | |||||||||||||| ||| ||||||| |||| || || || || ||| Sbjct 835690 GCGGATCCCTTCTACCGCTACAAGATGGAGCGCATCCAGTCCAAAGTAGAAGGCAAAGGA 835749 Query 6252 AACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCT 6311 ||||| || || |||||||| |||||| || | ||||| | ||| | ||||| Sbjct 835750 AACGGCATCAAGACCGTCATCGTCAACCTGAGCAACGTCGCGCACCAGCTTGCGCGCCCG 835809 Query 6312 GCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCAC 6371 ||| |||| || || || ||||| | |||||||||||| ||||| | | || | | Sbjct 835810 CCCAACTACGTGATCAAGTACTTCGGCTTCGAACTTGGCGCGCAGACCAACATCGACCCC 835869 Query 6372 AAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTT 6431 || |||| |||| ||| | ||||| | || | | ||| |||||||| || Sbjct 835870 AAGGACGACCGCTGGATCATCAACGGCGCTCACGAAGCCAGCAAACTGCAGGATCATCTG 835929 Query 6432 GACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 ||||||||||| |||||| ||||| ||| ||| ||| | || || ||||| Sbjct 835930 GACGGCTTTATCGCCAAGTTCGTGCTCTGTAAGGACTGCAAGAATCCCGAGAC 835982 Score = 131 bits (144), Expect = 1e-25 Identities = 207/294 (70%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 6192 GCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGA 6251 ||||| | |||||||| ||||| ||| ||||||| |||| || || ||||| ||| Sbjct 933319 GCGGATCCCTTCTACCGGTACAAGATGGAGCGCATCCAGTCCAAAGTAGAAGGTAAAGGA 933378 Query 6252 AACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCT 6311 ||||| || || |||||||| |||||| | | ||||| | ||| | ||||| Sbjct 933379 AACGGCATCAAGACCGTCATCGTCAACCTAAGCAATGTCGCGCACCAGCTTGCGCGCCCG 933438 Query 6312 GCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCAC 6371 ||| |||| || || || ||||| | |||||||||||| ||||| | | || | | Sbjct 933439 CCCAACTACGTGATCAAGTACTTCGGCTTCGAACTTGGCGCGCAGACCAACATCGACCCC 933498 Query 6372 AAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTT 6431 || |||| |||| ||| | ||||| | || | | ||| ||||||||| || Sbjct 933499 AAGGACGACCGCTGGATCATCAACGGCGCTCACGAAGCCAGCAAACTGCAGGACCATCTG 933558 Query 6432 GACGGCTTTATTCGC-AAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 || ||||||| |||| ||||| ||||| ||| ||| ||| | || || ||||| Sbjct 933559 GATGGCTTTA-TCGCTAAGTTCGTGCTCTGTAAGGACTGCAAGAATCCCGAGAC 933611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946252936792