Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 seq29 82.4 6e-11 >seq2 Length=2712501 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || || ||||| || ||||| || || |||| ||||| ||||| | | |||| ||| | Sbjct 1305180 TTCGTCAAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 1305239 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| || || |||||||||||||| ||||| || || || || || | Sbjct 1305240 GACAATGTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTG 1305299 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || || |||||||| ||| | |||||| ||||||| ||||||| |||||||| || || Sbjct 1305300 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1305359 Query 22408 GAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||| | ||| | || | || |||| || ||| Sbjct 1305360 GAGTCCACCCTTCATCTCGTCCTCCGTCTGCGTGGTGGT 1305398 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || || ||||| || ||||| || || |||| ||||| ||||| | | |||| ||| | Sbjct 1361307 TTCGTCAAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 1361366 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| || || |||||||||||||| ||||| || || || || || | Sbjct 1361367 GACAATGTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTG 1361426 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || || |||||||| ||| | |||||| ||||||| ||||||| |||||||| || || Sbjct 1361427 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1361486 Query 22408 GAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||| | ||| | || | || |||| || ||| Sbjct 1361487 GAGTCCACCCTTCATCTCGTCCTCCGTCTGCGTGGTGGT 1361525 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || || ||||| || ||||| || || |||| ||||| ||||| | | |||| ||| | Sbjct 1458832 TTCGTCAAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 1458891 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| || || |||||||||||||| ||||| || || || || || | Sbjct 1458892 GACAATGTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTG 1458951 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || || |||||||| ||| | |||||| ||||||| ||||||| |||||||| || || Sbjct 1458952 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1459011 Query 22408 GAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||| | ||| | || | || |||| || ||| Sbjct 1459012 GAGTCCACCCTTCATCTCGTCCTCCGTCTGCGTGGTGGT 1459050 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || || || || || ||||| || || |||| ||||| ||||| | | |||| ||| | Sbjct 1333012 TTCGTAAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 1333071 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| || || |||||||||||||| ||||| || || || || || | Sbjct 1333072 GACAATGTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTG 1333131 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || || |||||||| ||| | |||||| ||||||| ||||||| |||||||| || || Sbjct 1333132 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1333191 Query 22408 GAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || |||||| | ||| | || | || |||| || || Sbjct 1333192 GAGTCCACCCTTCATCTCGTCCTCCGTCTGCGTGGTGG 1333229 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | || Sbjct 1305399 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 1305458 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| ||||| || || ||| Sbjct 1305459 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAA 1305518 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| || | ||||| |||||| | ||||| |||||| Sbjct 1305519 CAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 1305578 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 1305579 ATCCAGAAGGAGTCGAC 1305595 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | || || || || |||| || || |||||| | | Sbjct 1305627 ATGCAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 1305686 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| || ||||||||||| ||||| || || Sbjct 1305687 GACACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 1305746 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||||| ||||| | | ||| | |||||||||| Sbjct 1305747 CAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACCTTGAGCGATTACAAC 1305806 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || | || |||| ||||| Sbjct 1305807 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTACGTCTGCGTGGAGG 1305853 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || || || || |||| || || || ||| | || Sbjct 1333459 ATGCAAATCTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTAGAATCATCC 1333518 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || |||||||||||||| ||||| || || Sbjct 1333519 GACACGATCGACAACGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 1333578 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || || || ||||| |||||| ||| || | ||| |||||| Sbjct 1333579 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGGACGTTGAGCGACTACAAC 1333638 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || |||| | || ||||| Sbjct 1333639 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTACGTGGAGG 1333685 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | || Sbjct 1361526 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 1361585 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| ||||| || || ||| Sbjct 1361586 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAA 1361645 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| || | ||||| |||||| | ||||| |||||| Sbjct 1361646 CAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 1361705 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 1361706 ATCCAGAAGGAGTCGAC 1361722 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | || || || || |||| || || |||||| | | Sbjct 1361754 ATGCAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 1361813 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| || ||||||||||| ||||| || || Sbjct 1361814 GACACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 1361873 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||||| ||||| | | ||| | |||||||||| Sbjct 1361874 CAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACCTTGAGCGATTACAAC 1361933 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || | || |||| ||||| Sbjct 1361934 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTACGTCTGCGTGGAGG 1361980 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | || Sbjct 1459051 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 1459110 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| ||||| || || ||| Sbjct 1459111 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAA 1459170 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| || | ||||| |||||| | ||||| |||||| Sbjct 1459171 CAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 1459230 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 1459231 ATCCAGAAGGAGTCGAC 1459247 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | || || || || |||| || || |||||| | | Sbjct 1459279 ATGCAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCA 1459338 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| || ||||||||||| ||||| || || Sbjct 1459339 GACACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 1459398 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||||| ||||| | | ||| | |||||||||| Sbjct 1459399 CAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACCTTGAGCGATTACAAC 1459458 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || || || | || |||| ||||| Sbjct 1459459 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTACGTCTGCGTGGAGG 1459505 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || || || Sbjct 1333231 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCC 1333290 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||| ||||| || || || Sbjct 1333291 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAG 1333350 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| || | ||||| |||||| | ||||| |||||| Sbjct 1333351 CAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 1333410 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 1333411 ATCCAGAAGGAGTCTAC 1333427 >seq29 Length=482220 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 ||||||||||||||| ||||| || || || || | || || |||||||| ||| | || Sbjct 457183 AGACAAGGAGGGTATCCCACCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGA 457242 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| ||||||| | ||||| |||||||| || || || || || Sbjct 457243 GGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGAC 457287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726813219080