Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045.
2_202017-04-03] 232 sequences; 44,765,267 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1 136 8e-27
seq64 100 6e-16
seq13 100 6e-16
>seq1
Length=3303888
Score = 136 bits (150), Expect = 8e-27
Identities = 274/401 (68%), Gaps = 4/401 (1%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||||||||| |||
Sbjct 529180 TCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 529121
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| ||||| | |||| ||||||||||| | || | ||| || || |||||||| |
Sbjct 529120 GCGTTGTAGTACTTGCTGTGGCCAAGTGCGAGGAGTAGGCGATCAGCGACAAACTCGATG 529061
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGAT 251741
||||| | ||| || | | ||||||||| | | | || || || | || || |||
Sbjct 529060 TACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGCG-CAGGGCAGGGCGTCCGAGAG 529002
Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801
||| || | || | | || || ||| | || | || | | || || |
Sbjct 529001 GAACTCTTGCTCAATCTCGACAGCTTCCGTGATGATCTGGTGGACGAGGTCGAGTGATGG 528942
Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTCGC 251860
|||||| || | || || ||| | || || || | | ||||| |||||||| |
Sbjct 528941 CTTGTTGCGGAGATGTGCGTGCAGCATGCAGGCGAAGTCGGT-GTGCATGCCCTCGTCAC 528883
Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920
| ||||| ||||||||| | ||||| ||||| | ||| || ||| | |||||||
Sbjct 528882 GGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCCCGCGCTTCTTCAGCCAGA 528823
Query 251921 AGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961
|||| ||| || || |||||||| | | ||||||||||
Sbjct 528822 AGATGGCGGCGAATGAGCCAGAGAAGAAGATACCCTCGACA 528782
Score = 132 bits (146), Expect = 1e-25
Identities = 271/400 (68%), Gaps = 2/400 (1%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||||||||| |||
Sbjct 494813 TCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 494754
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| ||||| | |||| ||||| ||||| | || | |||||| || || ||||| |
Sbjct 494753 GCGTTGTAGTACTTGCCGTGGCCGAGTGCGAGGAGTAGGCGGTCAGCGACGAACTCGATG 494694
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGAT 251741
||||| | ||| || | | ||||||||| | | | || || || | || || |||
Sbjct 494693 TACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGCG-CAGGGTAGGGCGTCTGAGAG 494635
Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801
||| || | ||| | | || || ||| | || | || | | || || |
Sbjct 494634 GAACTCTTGCTCGATCTCGACAGCTTCCGTGATGATCTGGTGGACAAGGTCGAGTGATGG 494575
Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861
|||||| || | || || ||| | | | || | ||||| |||||||| ||
Sbjct 494574 CTTGTTGCGGAGATGTGCGTGCAGCATACAGGCGAAGTCGGTGTGCATGCCCTCGTCACG 494515
Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921
|||| ||||||||| | ||||| ||||||| ||| || ||| ||||||||||
Sbjct 494514 GGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGCCCGCGCTTCTTGAGCCAGAA 494455
Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961
||| ||| || || |||||||| | | |||||||||
Sbjct 494454 GATAGCGGCGAACGAACCAGAGAAGAAAATGCCCTCGACA 494415
>seq64
Length=88202
Score = 100 bits (110), Expect = 6e-16
Identities = 115/152 (76%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731
|||| | ||| | ||| ||||| || ||||||| ||||| |||||||| || || |
Sbjct 13473 CCAACTTCGGTATCGACACCGAGCTTGTTTCTCACTCCCGCATGCGCGGTCTCTCCGGTG 13414
Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790
||||| ||||| | || ||| || |||| ||||| | ||||||| |||||||
Sbjct 13413 GCCAGCGTGTCAAGGTCGTTCTCGCCGCCTGCTCA-TGGCAGCGCCCTCACTTGATCGTG 13355
Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
||||||||||| |||||||| || ||||||||
Sbjct 13354 CTCGACGAGCCGACCAACTACCTCGACCGCGA 13323
>seq13
Length=1224135
Score = 100 bits (110), Expect = 6e-16
Identities = 115/152 (76%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731
|||| | ||| | ||| ||||| || ||||||| ||||| |||||||| || || |
Sbjct 410141 CCAACTTCGGTATCGACACCGAGCTTGTTTCTCACTCCCGCATGCGCGGTCTCTCCGGTG 410082
Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790
||||| ||||| | || ||| || |||| ||||| | ||||||| |||||||
Sbjct 410081 GCCAGCGTGTCAAGGTCGTTCTCGCCGCCTGCTCA-TGGCAGCGCCCTCACTTGATCGTG 410023
Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
||||||||||| |||||||| || ||||||||
Sbjct 410022 CTCGACGAGCCGACCAACTACCTCGACCGCGA 409991
Score = 100 bits (110), Expect = 6e-16
Identities = 115/152 (76%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731
|||| | ||| | ||| ||||| || ||||||| ||||| |||||||| || || |
Sbjct 418860 CCAACTTCGGTATCGACACCGAGCTTGTTTCTCACTCCCGCATGCGCGGTCTCTCCGGTG 418801
Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790
||||| ||||| | || ||| || |||| ||||| | ||||||| |||||||
Sbjct 418800 GCCAGCGTGTCAAGGTCGTTCTCGCCGCCTGCTCA-TGGCAGCGCCCTCACTTGATCGTG 418742
Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
||||||||||| |||||||| || ||||||||
Sbjct 418741 CTCGACGAGCCGACCAACTACCTCGACCGCGA 418710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027833744755112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |