Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 136 8e-27 seq64 100 6e-16 seq13 100 6e-16 >seq1 Length=3303888 Score = 136 bits (150), Expect = 8e-27 Identities = 274/401 (68%), Gaps = 4/401 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 529180 TCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 529121 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| | |||| ||||||||||| | || | ||| || || |||||||| | Sbjct 529120 GCGTTGTAGTACTTGCTGTGGCCAAGTGCGAGGAGTAGGCGATCAGCGACAAACTCGATG 529061 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | | ||||||||| | | | || || || | || || ||| Sbjct 529060 TACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGCG-CAGGGCAGGGCGTCCGAGAG 529002 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| || | || | | || || ||| | || | || | | || || | Sbjct 529001 GAACTCTTGCTCAATCTCGACAGCTTCCGTGATGATCTGGTGGACGAGGTCGAGTGATGG 528942 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTCGC 251860 |||||| || | || || ||| | || || || | | ||||| |||||||| | Sbjct 528941 CTTGTTGCGGAGATGTGCGTGCAGCATGCAGGCGAAGTCGGT-GTGCATGCCCTCGTCAC 528883 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 | ||||| ||||||||| | ||||| ||||| | ||| || ||| | ||||||| Sbjct 528882 GGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCCCGCGCTTCTTCAGCCAGA 528823 Query 251921 AGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961 |||| ||| || || |||||||| | | |||||||||| Sbjct 528822 AGATGGCGGCGAATGAGCCAGAGAAGAAGATACCCTCGACA 528782 Score = 132 bits (146), Expect = 1e-25 Identities = 271/400 (68%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 494813 TCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 494754 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| | |||| ||||| ||||| | || | |||||| || || ||||| | Sbjct 494753 GCGTTGTAGTACTTGCCGTGGCCGAGTGCGAGGAGTAGGCGGTCAGCGACGAACTCGATG 494694 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | | ||||||||| | | | || || || | || || ||| Sbjct 494693 TACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGCG-CAGGGTAGGGCGTCTGAGAG 494635 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| || | ||| | | || || ||| | || | || | | || || | Sbjct 494634 GAACTCTTGCTCGATCTCGACAGCTTCCGTGATGATCTGGTGGACAAGGTCGAGTGATGG 494575 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||||| || | || || ||| | | | || | ||||| |||||||| || Sbjct 494574 CTTGTTGCGGAGATGTGCGTGCAGCATACAGGCGAAGTCGGTGTGCATGCCCTCGTCACG 494515 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 |||| ||||||||| | ||||| ||||||| ||| || ||| |||||||||| Sbjct 494514 GGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGCCCGCGCTTCTTGAGCCAGAA 494455 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961 ||| ||| || || |||||||| | | ||||||||| Sbjct 494454 GATAGCGGCGAACGAACCAGAGAAGAAAATGCCCTCGACA 494415 >seq64 Length=88202 Score = 100 bits (110), Expect = 6e-16 Identities = 115/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||| | ||| ||||| || ||||||| ||||| |||||||| || || | Sbjct 13473 CCAACTTCGGTATCGACACCGAGCTTGTTTCTCACTCCCGCATGCGCGGTCTCTCCGGTG 13414 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 ||||| ||||| | || ||| || |||| ||||| | ||||||| ||||||| Sbjct 13413 GCCAGCGTGTCAAGGTCGTTCTCGCCGCCTGCTCA-TGGCAGCGCCCTCACTTGATCGTG 13355 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||||||||||| |||||||| || |||||||| Sbjct 13354 CTCGACGAGCCGACCAACTACCTCGACCGCGA 13323 >seq13 Length=1224135 Score = 100 bits (110), Expect = 6e-16 Identities = 115/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||| | ||| ||||| || ||||||| ||||| |||||||| || || | Sbjct 410141 CCAACTTCGGTATCGACACCGAGCTTGTTTCTCACTCCCGCATGCGCGGTCTCTCCGGTG 410082 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 ||||| ||||| | || ||| || |||| ||||| | ||||||| ||||||| Sbjct 410081 GCCAGCGTGTCAAGGTCGTTCTCGCCGCCTGCTCA-TGGCAGCGCCCTCACTTGATCGTG 410023 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||||||||||| |||||||| || |||||||| Sbjct 410022 CTCGACGAGCCGACCAACTACCTCGACCGCGA 409991 Score = 100 bits (110), Expect = 6e-16 Identities = 115/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||| | ||| ||||| || ||||||| ||||| |||||||| || || | Sbjct 418860 CCAACTTCGGTATCGACACCGAGCTTGTTTCTCACTCCCGCATGCGCGGTCTCTCCGGTG 418801 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 ||||| ||||| | || ||| || |||| ||||| | ||||||| ||||||| Sbjct 418800 GCCAGCGTGTCAAGGTCGTTCTCGCCGCCTGCTCA-TGGCAGCGCCCTCACTTGATCGTG 418742 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||||||||||| |||||||| || |||||||| Sbjct 418741 CTCGACGAGCCGACCAACTACCTCGACCGCGA 418710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833744755112