Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 351 2e-91 >seq1 Length=3303888 Score = 351 bits (388), Expect = 2e-91 Identities = 587/843 (70%), Gaps = 12/843 (1%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || || |||||| || ||||||||||| ||| | || || Sbjct 493999 ATGTACAAGAAGGCAGAGGCATCATTCTGGACAGCAGAGGAGATTGATCTGTCGAAAGAT 494058 Query 42369 ACGGCCGGCTGGGAGTCAC-TGTC--TGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 | || |||| | | | || ||| |||| || ||| | | | | || Sbjct 494059 CTGCACGACTGGAACAAGCGTCTCAATGATGACGAGCGATTCTTCATTTCACATGTGCTT 494118 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 |||||||||||||| || |||||||| ||||| |||||||||| | | |||| Sbjct 494119 GCCTTCTTCGCCGCATCAGACGGCATCGTCAACGAGAACCTGGTCGAGCGATTCAGTGGC 494178 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 |||||||| | |||||| ||||||||||||||||||||||| || ||||| | Sbjct 494179 GAGGTGCAAATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAATATC 494238 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 ||||| ||| ||| | ||| || |||| |||||| || || | | || | Sbjct 494239 CACTCCGAGACCTACTCACTACTCATCGACACCTACATCAGCGAACCTCGCCAACGCACA 494298 Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665 || || || ||||| || | || || |||||| |||||||| ||||||| || Sbjct 494299 TACCTCTTTAACGCCATCGACAACATCCCGTGCATCCGCAAGAAGGCCAACTGGGCACTA 494358 Query 42666 AACTGGATCGAGAGTCCCGACGCAACG---TTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 || |||||| || ||||||| || |||||| | || | |||||| | || Sbjct 494359 AAGTGGATC---AGCGACGACGCATCGACCTTCGGCTGCCGTCTCATTGCCTTTGCAGCT 494415 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 ||||||||||| |||||||| || | |||||| | ||||||||||||||| || | | Sbjct 494416 GTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGCTCAAGAAGCGCGGG 494475 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 ||||||||| ||||||||||| ||||| ||||| | | |||||||| |||| | Sbjct 494476 CTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCCCGTGACGAGGGCATGCACACC 494535 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC 42902 ||||| ||||| | ||| | || || ||| | ||||||| || || | ||| Sbjct 494536 GACTTCGCCTGTATGCTG--CACG-CACATCTCCGCAACAAGCCATCACTCGACCTTGTC 494592 Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC 42962 | ||||||||||| || || ||||||||| | ||||||||| | | | || ||| Sbjct 494593 CACCAGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTCTCAGACGCCCTACCC 494652 Query 42963 GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 | || ||||||||||| | | ||||||||| |||||||| ||| |||||| ||| Sbjct 494653 TGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGAC 494712 Query 43023 CATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTT 43082 | || || | | || | | || ||||||| | | |||||||||||| Sbjct 494713 CGCCTACTCCTCGCACTCGGCCACGGCAAGTACTACAACGCCACCAACCCCTTCGACTTC 494772 Query 43083 ATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 |||||||||||||| | | |||||||| ||||| |||||||||||||| | |||||| Sbjct 494773 ATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTAC 494832 Query 43143 CAG 43145 ||| Sbjct 494833 CAG 494835 Score = 349 bits (386), Expect = 7e-91 Identities = 590/845 (70%), Gaps = 16/845 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || || |||||| || |||||||| |||||| | ||||| Sbjct 528366 ATGTACAAGAAGGCAGAGGCATCATTCTGGACAGCAGAGGAGATCGACCTGTCGAAGGAT 528425 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAAAACATACT 42424 | || |||| | | |||| | || |||| || ||| | | | | || Sbjct 528426 CTGCACGACTGGAACAAGC-GTCTCAACGATGACGAGCGATTCTTCATTTCACATGTGCT 528484 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 |||||||||||||| || |||||||| ||||| |||||||||| | | |||| Sbjct 528485 TGCCTTCTTCGCCGCATCAGACGGCATTGTCAACGAGAACCTGGTCGAGCGCTTCAGTGG 528544 Query 42485 AGAGGTGCAG-TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||| || ||| || || ||||||||||||||||||||||| || |||||| Sbjct 528545 TGAGGTCCAAATACCC-GACGCTCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACA 528603 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | ||||| ||| ||| | ||| || |||| |||||| || || | | || | Sbjct 528604 TCCACTCCGAGACCTACTCACTACTCATCGACACCTACATCAGTGAACCTCGCCAACGCA 528663 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 || ||||| ||||| || | || ||||||||| |||||||| | ||||| | Sbjct 528664 CATACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCAATTGGGCAC 528723 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACG---TTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 |||| |||||| || ||| ||| || |||||| | || | || || | | Sbjct 528724 TCAAGTGGATC---AGCGACGATGCATCGACCTTCGGCTGCCGTCTCATCGCTTTCGCAG 528780 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG 42780 | |||||||| ||||||||||| ||| | |||||| ||||||||||||| ||| || | Sbjct 528781 CTGTCGAGGGTATCTTCTTCTCTGGCTCATTCGCCGCCATCTTCTGGCTGAAGAAGCGCG 528840 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | |||||||| ||||||||||| ||||| |||||| | | |||||||| |||| | Sbjct 528841 GGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACA 528900 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900 ||||| |||||| | ||| | || || ||| | ||||||| || || | | Sbjct 528901 CCGACTTCGCCTGCATGCTG--CACG-CACATCTCCGCAACAAGCCATCACTCGACCTCG 528957 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 ||| ||||||||||| || || ||||| ||| | ||||||||| || | | |||| Sbjct 528958 TCCACCAGATCATCACGGAAGCTGTCGAGATTGAGCAAGAGTTCCTCTCGGACGCCCTGC 529017 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 || | || ||||||||||| | | ||||||||| |||||||| ||| ||||| | Sbjct 529018 CCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTG 529077 Query 43021 ACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080 | | || || | | || | |||| ||||||| | | ||||||||||| Sbjct 529078 ATCGCCTACTCCTCGCACTTGGCCACAGCAAGTACTACAACGCCACCAACCCCTTCGACT 529137 Query 43081 TTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACT 43140 | |||||||||||||| | | |||||||| ||||| |||||||||||||| | |||| Sbjct 529138 TCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACT 529197 Query 43141 ACCAG 43145 ||||| Sbjct 529198 ACCAG 529202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336461416320