Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 134 3e-26 seq1 89.7 1e-12 >seq2 Length=2712501 Score = 134 bits (148), Expect = 3e-26 Identities = 173/236 (73%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||||||||| | ||| ||||| || | ||| || || ||||| || |||| Sbjct 1333461 CATG-CCACCGCGGAGGCGAAGGACGAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGT 1333403 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| ||||| || | ||| || || ||||| || || ||||| || | Sbjct 1333402 CGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGCTGG---T 1333346 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| || || || || |||||||| |||| || ||||| || || | ||| | Sbjct 1333345 CTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCGGAGG 1333286 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || ||||| ||||| ||||| || || || ||||||||||| ||||||||| Sbjct 1333285 ACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATT 1333230 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| ||||| || | || || || ||||| || ||||||| Sbjct 1305625 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 1305566 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||| || || ||||| || || |||||||| ||||| Sbjct 1305565 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGG---TCTGGA 1305509 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| |||| || || || || || | ||| || || Sbjct 1305508 GGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCA 1305449 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 1305448 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1305399 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| | ||| || || || || || || || || |||||| Sbjct 1333649 TCCTTCTGGATGTTGTAGTCGCTCAACGTCCGGCCATCCTCCAACTGCTTACCAGCGAAG 1333590 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || |||||| || || || |||||||| |||| |||||||| Sbjct 1333589 ATAAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTG 1333530 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| |||||||| ||||||||||| ||||| || || |||||||||||| Sbjct 1333529 TCGATCGTGTCGGATGATTCTACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACG 1333470 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 1333469 AAGATTTGCAT 1333459 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| ||||| || | || || || ||||| || ||||||| Sbjct 1361752 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 1361693 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||| || || ||||| || || |||||||| ||||| Sbjct 1361692 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGG---TCTGGA 1361636 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| |||| || || || || || | ||| || || Sbjct 1361635 GGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCA 1361576 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 1361575 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1361526 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| ||||| || | || || || ||||| || ||||||| Sbjct 1459277 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 1459218 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||| || || ||||| || || |||||||| ||||| Sbjct 1459217 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGG---TCTGGA 1459161 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| |||| || || || || || | ||| || || Sbjct 1459160 GGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCA 1459101 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 1459100 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1459051 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||| | || | ||||| || || || || || |||||| Sbjct 1305817 TCCTTCTGGATGTTGTAATCGCTCAAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAG 1305758 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || |||||| || || |||||||| || |||| |||||||| Sbjct 1305757 ATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTG 1305698 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||||| || ||||||||||| ||||| || || |||||||||||| Sbjct 1305697 TCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACG 1305638 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 1305637 AAAATTTGCAT 1305627 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||| | || | ||||| || || || || || |||||| Sbjct 1361944 TCCTTCTGGATGTTGTAATCGCTCAAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAG 1361885 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || |||||| || || |||||||| || |||| |||||||| Sbjct 1361884 ATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTG 1361825 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||||| || ||||||||||| ||||| || || |||||||||||| Sbjct 1361824 TCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACG 1361765 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 1361764 AAAATTTGCAT 1361754 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||| | || | ||||| || || || || || |||||| Sbjct 1459469 TCCTTCTGGATGTTGTAATCGCTCAAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAG 1459410 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || |||||| || || |||||||| || |||| |||||||| Sbjct 1459409 ATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTG 1459350 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||||| || ||||||||||| ||||| || || |||||||||||| Sbjct 1459349 TCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACG 1459290 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 1459289 AAAATTTGCAT 1459279 >seq1 Length=3303888 Score = 89.7 bits (98), Expect = 1e-12 Identities = 172/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 269091 CATAATGGAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTAT 269150 ||| | |||||| || | ||| |||||||| | | ||||| | || || | | Sbjct 494601 CATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTCTCAGACGCCCTACCCTGCGCACT 494660 Query 269151 GATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTT 269210 |||| ||||| ||| | |||||| || || ||||| ||||| ||||| || | | Sbjct 494661 TCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTACT 494720 Query 269211 CACGGCACTCGGTTATGAGAAAGTG-TACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 | |||||||| | | | |||| ||||| | | || ||||||| ||| ||||| Sbjct 494721 CCTCGCACTCGGCCACG-GCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGA 494779 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTC 269329 || || |||| || ||||||||||||||||| ||||| || | ||||| || Sbjct 494780 ACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTACCAGAAGG 494839 Query 269330 CTGGTGTAATG 269340 ||||||| ||| Sbjct 494840 CTGGTGTCATG 494850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650893477296