Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1 141 2e-28 >seq1 Length=3303888 Score = 141 bits (156), Expect = 2e-28 Identities = 278/407 (68%), Gaps = 8/407 (2%) Strand=Plus/Plus Query 243351 CGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTT 243410 ||| ||||| ||||| ||| || ||||||| |||||| | || |||||| | Sbjct 494448 CGCTATCTTCTGGCTCAAGAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAACGAGCT 494507 Query 243411 CATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG---GTGAGCTTATGTATTCAAAGCT 243467 ||| || ||||||||| | ||| | |||| || ||| | | || | || Sbjct 494508 CATTTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGTATGCT---GCACGCACATCT 494564 Query 243468 CCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527 || ||||||| | || |||| ||| | || |||||||| ||||| || || | ||| Sbjct 494565 CCGCAACAAGCCATCACTCGACCTTGTCCACCAGATCATCACGGAAGCTGTCGAGATCGA 494624 Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCAT 243587 | || ||| | | ||||| | || ||| ||| | ||||||||| | | ||||| Sbjct 494625 GCAAGAGTTCCTCTCAGACGCCCTACCCTGCGCACTTCTCGGCATGAACGCCAAGCTCAT 494684 Query 243588 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT 243647 | | ||||||||||| ||||| || |||||| | || |||| || || | | | |||| Sbjct 494685 GTGCCAGTACATCGAGTTCGTCGCTGACCGCCTACTCCTCGCACTCGGCCACG-GCAAGT 494743 Query 243648 -GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTA 243706 |||||| ||| |||||||| | ||| |||||| ||| || || || || || | Sbjct 494744 ACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGA 494803 Query 243707 ACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATG 243753 |||||||||| ||||| || |||| || || ||||||| ||| Sbjct 494804 ACTTCTTCGAGAAGCGCGTAGGTGACTACCAGAAGGCTGGTGTCATG 494850 Score = 140 bits (154), Expect = 7e-28 Identities = 277/405 (68%), Gaps = 4/405 (1%) Strand=Plus/Plus Query 243351 CGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTT 243410 ||||||||| |||||| ||| || | ||||| |||||| | || |||||| | Sbjct 528815 CGCCATCTTCTGGCTGAAGAAGCGCGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGCT 528874 Query 243411 CATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCA 243470 |||| || ||||||||| | ||| | |||| | || | || | |||| Sbjct 528875 CATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCATGCTGCACGCACATCTCCG 528934 Query 243471 GAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAA 243530 ||||||| | || |||| ||| | || |||||||| ||||| || || | || | Sbjct 528935 CAACAAGCCATCACTCGACCTCGTCCACCAGATCATCACGGAAGCTGTCGAGATTGAGCA 528994 Query 243531 GGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGG 243590 || ||| | | ||||| | || ||| ||| | ||||||||| | | |||||| | Sbjct 528995 AGAGTTCCTCTCGGACGCCCTGCCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTG 529054 Query 243591 ACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT-GT 243649 ||||||||||| || || || || ||| | || |||| ||||| | || |||| | Sbjct 529055 CCAGTACATCGAGTTTGTCGCTGATCGCCTACTCCTCGCACTTGGCCA-CAGCAAGTACT 529113 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 ||||| ||| |||||||| | ||| |||||| ||| || || || || || |||| Sbjct 529114 ACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACT 529173 Query 243710 TCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATG 243753 ||||||| ||||| || |||| || || | | || ||||| ||| Sbjct 529174 TCTTCGAGAAGCGCGTAGGTGACTACCAGAAGGCC-GGTGTCATG 529217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102876721689200