Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1 167 3e-36 seq6 84.2 3e-11 >seq1 Length=3303888 Score = 167 bits (184), Expect = 3e-36 Identities = 445/665 (67%), Gaps = 20/665 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| ||| | | | ||| |||||||| Sbjct 529199 GTAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCAT 529140 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 || || || ||||| | | ||| | | ||| || || || || |||||| Sbjct 529139 GAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCTGTGGCC--AA---GTGCGAGGAGT 529085 Query 125876 ---CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 125932 ||||| | ||| |||| ||||||| |||| || | |||||| |||| || Sbjct 529084 AGGCGATCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGT 529025 Query 125933 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATG 125992 || || || |||||| ||| |||| | | |||||| || || |||||| | ||| Sbjct 529024 GCGCAGGGCAGGGCGTCCGAGAGGAACTCTTGCTCAATCTCGACAGCTTCCGTGATGATC 528965 Query 125993 GCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAA-GT-CTTGAAGAGTTCCACGGCAA 126050 ||| | | ||| | || | ||||| | | || | || || | | ||| | Sbjct 528964 TGGTGGACGAGGTCGAGTGATGGCTTGTTGCGGAGATGTGCGTGCAGCATGCA--GGCGA 528907 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || ||| | |||||||||||||||||||| || || |||||| || || |||| Sbjct 528906 AGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCA 528847 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 |||| || |||||||||| |||||| || || ||||| || ||||||||||| |||| Sbjct 528846 TGAGCCCGCGCTTCTTCAGCCAGAAGATGGCGGCGAATGAGCCAGAGAAGAAGATACCCT 528787 Query 126171 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGT-GTCAAACCAC 126229 | ||| ||||| || | |||||| |||| | | || | | || | | |||| Sbjct 528786 CGACAGCTGCGAAAGCGATGAGACG-GCAGCCGAAGGTCGATGCATCGTCGCTGATCCAC 528728 Query 126230 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA-G 126288 || | ||||| | ||||| || ||| || |||| | | | ||| || | |||| | Sbjct 528727 TTGAGTGCCCAATTGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAGG 528668 Query 126289 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 126348 | | | || || || || ||||||| | || |||||| ||| || || ||| Sbjct 528667 TATGTGCGTTGGCGA-GGTTCACTGATGTAGGTGTCGATGAGTAGTGAGTAGGTCTCGGA 528609 Query 126349 GTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTA 126407 ||||| | | ||| || | ||| | ||||||| |||| || ||| ||| || | Sbjct 528608 GTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGAGCGTCGGGTATTTGGA 528550 Query 126408 CCTCA 126412 ||||| Sbjct 528549 CCTCA 528545 Score = 134 bits (148), Expect = 2e-26 Identities = 400/604 (66%), Gaps = 16/604 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| ||| | | | ||| |||||||| Sbjct 494832 GTAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCAT 494773 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGT--TGGCACCCCAATCTGTTTGAGGA 125873 || || || ||||| | | ||| | | ||| |||| | | | | ||| | Sbjct 494772 GAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCCGTGGC---CGAGTGCGAG-GAGTA 494717 Query 125874 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 125933 | || || | |||| |||| ||||||| |||| || | |||||| |||| || Sbjct 494716 GGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTG 494657 Query 125934 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG 125993 || || || ||||| ||| |||| | | ||| || || || |||||| | ||| Sbjct 494656 CGCAGGGTAGGGCGTCTGAGAGGAACTCTTGCTCGATCTCGACAGCTTCCGTGATGATCT 494597 Query 125994 CGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAA-GT-CTTGAAGAGTTCCACGGCAAA 126051 ||| | ||| | || | ||||| | | || | || || | | ||| || Sbjct 494596 GGTGGACAAGGTCGAGTGATGGCTTGTTGCGGAGATGTGCGTGCAGCATACA--GGCGAA 494539 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| | |||||||||||||| ||||| || || |||||| || || ||||| Sbjct 494538 GTCGGTGTGCATGCCCTCGTCACGGGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAT 494479 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 || || |||||||| | |||||| || || || ||||| |||||||| || ||||| Sbjct 494478 CAGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCGAACGAACCAGAGAAGAAAATGCCCTC 494419 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGT-GTCAAACCACT 126230 ||| || || |||| |||||| |||| | | || | | || | | ||||| Sbjct 494418 GACAGCTGCAAAGGCAATGAGACG-GCAGCCGAAGGTCGATGCGTCGTCGCTGATCCACT 494360 Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA-GT 126289 | | ||||| | ||||| || ||| ||||||| | | | ||| || | ||||| || Sbjct 494359 TTAGTGCCCAGTTGGCCTTCTTGCGGATGCACGGGATGTTGTCGATGGCGTTAAAGAGGT 494300 Query 126290 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCG 126349 | | || || || || ||||||| | || |||||| ||| || || ||| | Sbjct 494299 ATGTGCGTTGGCGA-GGTTCGCTGATGTAGGTGTCGATGAGTAGTGAGTAGGTCTCGGAG 494241 Query 126350 TGGA 126353 |||| Sbjct 494240 TGGA 494237 >seq6 Length=1760288 Score = 84.2 bits (92), Expect = 3e-11 Identities = 214/323 (66%), Gaps = 6/323 (2%) Strand=Plus/Minus Query 172619 AGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAG 172678 |||||||| || || |||||||||| ||| ||||||||| |||||||| |||| || Sbjct 172945 AGACCCTTGATATGCGAACCATCGTGATCTTGATCCGTCATGATCATAAGGTGACCGTAT 172886 Query 172679 CGAAGCTCGGAAACATCTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGA 172738 || || | ||||| || ||||| || || | |||| || |||||||| Sbjct 172885 CGCAGACCTTTGGTGTCTTGGTAGTCCTTCTTATGCTGCAAGCCCATGAACTTCTTGATG 172826 Query 172739 TCATTGAACTCTTGGTTTGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACAC 172798 | | || |||| ||| || || || | | || || || || |||||| | Sbjct 172825 TTCTGGATCTCTGCGTTCTTTGAGATCTGGTCGATGGATGCGTCTCGTACATTTAGCATC 172766 Query 172799 TTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACT 172858 || ||||| || || || || ||| || |||| || || || | | | || || | Sbjct 172765 TTACCACGCAGGGGAAATACGCCGAAGAGATCTGGATTCACTACTGCACGGCCCGCCAGG 172706 Query 172859 GCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTT---TCCAGATTGT 172915 || || | || || ||||| || |||| ||||| |||||||| |||| | | Sbjct 172705 GCTAGCAACGATGCAGAGTCACCTTCAGTCAGAATGAGGGTACACTTCCATCCATCCT-T 172647 Query 172916 GCCGTCCCCGCCTTGTTCGCATC 172938 | || || |||||||||||||| Sbjct 172646 G--GTGCCAGCCTTGTTCGCATC 172626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351867674560