Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 145 8e-30 seq2 105 7e-18 >seq1 Length=3303888 Score = 145 bits (160), Expect = 8e-30 Identities = 355/528 (67%), Gaps = 19/528 (4%) Strand=Plus/Plus Query 52318 TCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCG 52377 |||| || | || ||| | ||||| ||||| | |||||| | ||||||||| |||| Sbjct 528682 TCGACAACATCCCCTGCATCCGCAAGAAGGCCAATTGGGCACTCAAGTGGATC---AGCG 528738 Query 52378 ACACCGCCACG--CT--GGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGttt 52433 || || || || ||| | || | | || ||||| |||||||| | || Sbjct 528739 ACGATGCATCGACCTTCGGCTGC-CGTCTCATCGCTTTCGCAGCTGTCGAGGGTATCTTC 528797 Query 52434 ttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTG 52493 || || ||| || ||||||||||| | | || | | || | ||||||||||| Sbjct 528798 TTCTCTGGCTCATTCGCCGCCATCTTCTGGCTGAAGAAGCGCGGGCTCATGCCCGGCCTC 528857 Query 52494 ACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC 52553 || ||| ||||||| | || || || ||||| || ||||||| ||||| || ||| | Sbjct 528858 ACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCATG 528917 Query 52554 TACTACAAGACGCGCGTGACCGAAAAATTGGAT---TCGGACACGATCCTGAGCATGTTC 52610 || || ||| | | ||| || | || ||| | || | || || || Sbjct 528918 --CTGCA---CGCACATCTCCGCAACAAGCCATCACTCGACCTCGTCCACCAG-ATCATC 528971 Query 52611 AAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTG 52670 | ||| || || | || || | ||||| | ||| ||| ||||| || || || Sbjct 528972 ACGGAAGCTGTCGAGATTGAGCAAGAGTTCCTCTCGGACGCCCTGCCCTGCGCACTTCTC 529031 Query 52671 GGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGT- 52729 ||||||||||| || ||||||| |||||||||||||||| || ||||| || | | Sbjct 529032 GGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTGATCGCCTACTCCTC 529091 Query 52730 GCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACAT 52789 ||| || || || ||||||| |||||| ||| || || || || ||| | ||||| Sbjct 529092 GCA-CTTGGCCACAGCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACAT 529150 Query 52790 TTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || || | |||||||| ||||| ||||||||||| || || || || Sbjct 529151 CTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTA 529198 Score = 138 bits (152), Expect = 1e-27 Identities = 354/530 (67%), Gaps = 23/530 (4%) Strand=Plus/Plus Query 52318 TCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCG 52377 |||| || | |||||| | ||||| ||||| | |||||| | ||||||||| |||| Sbjct 494315 TCGACAACATCCCGTGCATCCGCAAGAAGGCCAACTGGGCACTAAAGTGGATC---AGCG 494371 Query 52378 ACACCGCCACG--CT--GGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGttt 52433 || ||| || || ||| | || | | ||||| || ||||||||| | || Sbjct 494372 ACGACGCATCGACCTTCGGCTGC-CGTCTCATTGCCTTTGCAGCTGTCGAGGGCATTTTC 494430 Query 52434 ttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTG 52493 || || || || ||||| ||||| | | || | | || | ||||||||||| Sbjct 494431 TTCTCTGGTTCGTTCGCCGCTATCTTCTGGCTCAAGAAGCGCGGGCTGATGCCCGGCCTC 494490 Query 52494 ACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC 52553 || ||| ||||||| | || || || ||||| || ||||||| ||||| || || | Sbjct 494491 ACCTTCTCCAACGAGCTCATTTCCCGTGACGAGGGCATGCACACCGACTTCGCCTG--TA 494548 Query 52554 TACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCA-----TGT 52608 | || || ||| | | ||| || | || || ||| | || || | Sbjct 494549 TGCTGCA---CGCACATCTCCGCAACAAGCCATC---ACTCGACCTTGTCCACCAGATCA 494602 Query 52609 TCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGC 52668 ||| ||| || || | ||||| | ||||| | | | ||| || || || || | Sbjct 494603 TCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTCTCAGACGCCCTACCCTGCGCACTTC 494662 Query 52669 TGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGG 52728 | ||||||||||| || ||||||| ||||||||||||| || || || || || | Sbjct 494663 TCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTACTCC 494722 Query 52729 T-GCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAAC 52787 | ||| ||||| || ||||||| |||||| ||| || || || || ||| | ||| Sbjct 494723 TCGCA-CTCGGCCACGGCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAAC 494781 Query 52788 ATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || || || | |||||||| ||||| ||||||||||| || || || || Sbjct 494782 ATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTA 494831 >seq2 Length=2712501 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || |||||||||||| || |||| Sbjct 1305592 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCG 1305533 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || || ||||||||||| ||||| || || || ||||| ||| || || | | Sbjct 1305532 AAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACA 1305473 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||| ||||||| || | || || || || || || || Sbjct 1305472 TTG-TCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 1305414 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 1305413 GACGAAGATCTGCAT 1305399 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || |||||||||||| || |||| Sbjct 1361719 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCG 1361660 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || || ||||||||||| ||||| || || || ||||| ||| || || | | Sbjct 1361659 AAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACA 1361600 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||| ||||||| || | || || || || || || || Sbjct 1361599 TTG-TCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 1361541 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 1361540 GACGAAGATCTGCAT 1361526 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || |||||||||||| || |||| Sbjct 1459244 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCG 1459185 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || || ||||||||||| ||||| || || || ||||| ||| || || | | Sbjct 1459184 AAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACA 1459125 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||| ||||||| || | || || || || || || || Sbjct 1459124 TTG-TCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 1459066 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 1459065 GACGAAGATCTGCAT 1459051 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || |||||||||||| || |||| Sbjct 1333424 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCG 1333365 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || ||||| ||||| ||||| || || || ||||| ||| || || | Sbjct 1333364 AAAATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACG 1333305 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||| ||||||| || | || || ||||| || || || Sbjct 1333304 TTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTG 1333245 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 1333244 ACGAAGATCTGCAT 1333231 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || || || | | |||||||| || ||||||||||||||| Sbjct 1333685 CCTCCACGTAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 1333626 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| | || ||||| | |||| |||||||| ||||| || || Sbjct 1333625 AACGTCCGGCCATCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGTGGG 1333566 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | ||||||| || || ||| Sbjct 1333565 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATCGTGTCGGATGATTCTACC 1333506 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| ||| | || || || || ||||| || || || || |||||| Sbjct 1333505 TCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCATG 1333458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260960839040