Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045.
2_202017-04-03] 232 sequences; 44,765,267 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1 127 2e-24
seq2 118 1e-21
seq19 84.2 2e-11
>seq1
Length=3303888
Score = 127 bits (140), Expect = 2e-24
Identities = 358/537 (67%), Gaps = 11/537 (2%)
Strand=Plus/Plus
Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105
|| || |||| |||| | ||| |||||| | |||| |||||| | ||||| | |||
Sbjct 528669 CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCAATTGGGCACTCAAG 528728
Query 47106 TACATTGAAAACGAA--AACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCG 47163
| || |||| | || | || ||| | ||| | ||||||||||| ||||
Sbjct 528729 TGGATCAGCGACGATGCATCGACCTTC-GGCTGC-CGTCTCATCGCTTTCGCAGCTGTCG 528786
Query 47164 AGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTA 47223
|||| |||||||||| ||| || || || || || | |||| | || | |
Sbjct 528787 AGGGTATCTTCTTCTCTGGCTCATTCGCCGCCATCTTCTGGCTGAAGAAGCGCGGGCTCA 528846
Query 47224 TGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACT 47283
||||||||||||| || ||||||||| ||||| | ||||| ||| |||||||| |||
Sbjct 528847 TGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACT 528906
Query 47284 TTGCCTGTCT-CTACTACAACACTAGAGTCG-ATCAAAAGTTGGACGTGCCCACCGTCAG 47341
| ||||| | || | || ||| | || | ||| | || | || ||||
Sbjct 528907 TCGCCTGCATGCTGC-AC-GCAC-ATCTCCGCAACAAGCCAT-CACTCGACC-TCGTCCA 528961
Query 47342 CGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGA 47401
| | || | | ||||| |||| |||||| ||||| || | || || ||||||
Sbjct 528962 CCAGATCATCACGGAAGCTGTCGAGATTGAGCAAGAGTTCCTCTCGGACGCCCTGCCCTG 529021
Query 47402 ATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCG 47461
| | | || |||||||| || | ||| | |||||||||| |||||||| || ||
Sbjct 529022 CGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTGATCG 529081
Query 47462 CCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTAT 47521
||| ||| | || | |||| ||| || || || || ||||| || ||
Sbjct 529082 CCTACTCCTCGCACTTGGCCACAGCAAGTACTACAACGCCACCAACCCCTTCGACTTCAT 529141
Query 47522 GAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
| | ||||| || |||| |||||||| ||||| |||||||||||||| || || ||
Sbjct 529142 GGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTA 529198
Score = 95.1 bits (104), Expect = 1e-14
Identities = 277/426 (65%), Gaps = 17/426 (4%)
Strand=Plus/Plus
Query 47160 GTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGA 47219
||||||||| | |||||||| || || || || || || | | || | ||
Sbjct 494416 GTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGCTCAAGAAGCGCGGG 494475
Query 47220 GTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACC 47279
| |||||||||||||| || ||||||||| || || | ||||| ||| ||||||||
Sbjct 494476 CTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCCCGTGACGAGGGCATGCACACC 494535
Query 47280 AACTTTGCCTGTCT-CTACTACAACA------CTAGAGTCGATCAAAAGTTGGACGTGCC 47332
|||| |||||| | || | ||| | | | | |||| | | | || |
Sbjct 494536 GACTTCGCCTGTATGCTGCACGCACATCTCCGCAACAAGCCATCAC---TCGACCTTGTC 494592
Query 47333 CACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGC 47392
|||| | || | | ||||| |||| || ||| ||||| || | || ||
Sbjct 494593 CACC-------AGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTCTCAGACGC 494645
Query 47393 TCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGT 47452
|| ||| | | | || |||||||| || | ||| | |||||||||| || ||
Sbjct 494646 CCTACCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGT 494705
Query 47453 CGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATT 47512
||| |||||||| ||| | || | |||| ||| || || || || ||
Sbjct 494706 CGCTGACCGCCTACTCCTCGCACTCGGCCACGGCAAGTACTACAACGCCACCAACCCCTT 494765
Query 47513 CGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGG 47572
||| || ||| | ||||| || |||| |||||||| ||||| |||||||||||||| ||
Sbjct 494766 CGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGG 494825
Query 47573 CGAATA 47578
|| ||
Sbjct 494826 TGACTA 494831
>seq2
Length=2712501
Score = 118 bits (130), Expect = 1e-21
Identities = 170/236 (72%), Gaps = 3/236 (1%)
Strand=Plus/Minus
Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939
|||||| || || |||| |||| |||||| || | ||| ||||| || || || |||||
Sbjct 1333691 TACTGC-CCTCCACGTAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTA 1333633
Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999
|||| || ||| || ||| || | ||| || |||||| |||| | |||||||| ||
Sbjct 1333632 GTCGCTCAACGTCCGGCCATCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGGTC 1333573
Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058
|| || || |||||||||||| ||| ||| ||| | |||| |||| ||||| |
Sbjct 1333572 TGGTGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTG-TCGATCGTGTCGGATG 1333514
Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| || |||| || | || ||||| || ||||| || || || || ||||||
Sbjct 1333513 ATTCTACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCATG 1333458
Score = 111 bits (122), Expect = 1e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | || | || | ||| | || ||||| || || || ||||| |||
Sbjct 1333230 TCCACCACGCAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1333171
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| ||||| ||| || ||||| || || ||| ||||||| |||||||| || |||||
Sbjct 1333170 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGG 1333111
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|||||||||||||| ||| || ||||| | |||| |||||| | ||||| ||
Sbjct 1333110 AATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCAC 1333051
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
|| | ||| | || |||||||||| || ||||| ||
Sbjct 1333050 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTTACGAA 1333012
Score = 109 bits (120), Expect = 5e-19
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | ||||| ||| || ||||| || ||
Sbjct 1305367 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 1305308
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| |||||||| || ||||| |||||||||||||| ||| || ||||
Sbjct 1305307 GCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTG 1305248
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | ||||| || || | ||| | || |||||||||| |||
Sbjct 1305247 ACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTT 1305188
Query 127097 TTTACAAA 127104
|| || ||
Sbjct 1305187 TTGACGAA 1305180
Score = 109 bits (120), Expect = 5e-19
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | ||||| ||| || ||||| || ||
Sbjct 1361494 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 1361435
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| |||||||| || ||||| |||||||||||||| ||| || ||||
Sbjct 1361434 GCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTG 1361375
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | ||||| || || | ||| | || |||||||||| |||
Sbjct 1361374 ACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTT 1361315
Query 127097 TTTACAAA 127104
|| || ||
Sbjct 1361314 TTGACGAA 1361307
Score = 109 bits (120), Expect = 5e-19
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | ||||| ||| || ||||| || ||
Sbjct 1459019 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 1458960
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| |||||||| || ||||| |||||||||||||| ||| || ||||
Sbjct 1458959 GCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTG 1458900
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | ||||| || || | ||| | || |||||||||| |||
Sbjct 1458899 ACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTT 1458840
Query 127097 TTTACAAA 127104
|| || ||
Sbjct 1458839 TTGACGAA 1458832
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | || | || | ||||||||| || || || ||||| |||
Sbjct 1333457 CCACCGCGGAGGCGAAGGACGAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGAA 1333398
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || || || || || ||| | || | |||||||| || |||||
Sbjct 1333397 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGA 1333338
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| ||| ||||| |||| |||| |||||| | ||| ||
Sbjct 1333337 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG-TCGATGGTGTCGGAGGACTCAAC 1333279
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || ||||| || || || || || || ||||||||
Sbjct 1333278 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1333231
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | ||||| || || || || || ||
Sbjct 1305595 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCG 1305536
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | || | ||||| || || ||||| ||||||||||||||| ||| ||| ||||
Sbjct 1305535 GCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTG 1305476
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | | ||| || |||| ||| | || |||||||| || ||
Sbjct 1305475 ACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 1305416
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 1305415 TTGACGAAGATCTGCAT 1305399
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | ||||| || || || || || ||
Sbjct 1361722 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCG 1361663
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | || | ||||| || || ||||| ||||||||||||||| ||| ||| ||||
Sbjct 1361662 GCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTG 1361603
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | | ||| || |||| ||| | || |||||||| || ||
Sbjct 1361602 ACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 1361543
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 1361542 TTGACGAAGATCTGCAT 1361526
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | ||||| || || || || || ||
Sbjct 1459247 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCG 1459188
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | || | ||||| || || ||||| ||||||||||||||| ||| ||| ||||
Sbjct 1459187 GCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTG 1459128
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | | ||| || |||| ||| | || |||||||| || ||
Sbjct 1459127 ACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 1459068
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 1459067 TTGACGAAGATCTGCAT 1459051
>seq19
Length=770886
Score = 84.2 bits (92), Expect = 2e-11
Identities = 125/175 (71%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093
|| ||| || ||| |||||| || | ||||||| || || ||||||||||| || ||
Sbjct 62828 CATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACGACTTGGAACTCGCCGGCCAGGAC 62887
Query 146094 GCGCCTCAGA-TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCT 146152
|| | ||| || | |||||||||| ||||||| || |||| ||| || | ||||
Sbjct 62888 ACGAC-GAGAGTAGATGTTGCTGGTGTACGGCTCAAAGCACTCATTGAACCCCATGATCT 62946
Query 146153 GCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207
||| || | || || ||||| ||| || |||| |||||| | ||||| ||
Sbjct 62947 GCGATGTGCTTGCTGTGGGCATAGGCGCGACGAGCAGAGAGTTGCGGACGCCATG 63001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475499421047680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |