Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 seq2 118 1e-21 seq19 84.2 2e-11 >seq1 Length=3303888 Score = 127 bits (140), Expect = 2e-24 Identities = 358/537 (67%), Gaps = 11/537 (2%) Strand=Plus/Plus Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105 || || |||| |||| | ||| |||||| | |||| |||||| | ||||| | ||| Sbjct 528669 CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCAATTGGGCACTCAAG 528728 Query 47106 TACATTGAAAACGAA--AACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCG 47163 | || |||| | || | || ||| | ||| | ||||||||||| |||| Sbjct 528729 TGGATCAGCGACGATGCATCGACCTTC-GGCTGC-CGTCTCATCGCTTTCGCAGCTGTCG 528786 Query 47164 AGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTA 47223 |||| |||||||||| ||| || || || || || | |||| | || | | Sbjct 528787 AGGGTATCTTCTTCTCTGGCTCATTCGCCGCCATCTTCTGGCTGAAGAAGCGCGGGCTCA 528846 Query 47224 TGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACT 47283 ||||||||||||| || ||||||||| ||||| | ||||| ||| |||||||| ||| Sbjct 528847 TGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACT 528906 Query 47284 TTGCCTGTCT-CTACTACAACACTAGAGTCG-ATCAAAAGTTGGACGTGCCCACCGTCAG 47341 | ||||| | || | || ||| | || | ||| | || | || |||| Sbjct 528907 TCGCCTGCATGCTGC-AC-GCAC-ATCTCCGCAACAAGCCAT-CACTCGACC-TCGTCCA 528961 Query 47342 CGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGA 47401 | | || | | ||||| |||| |||||| ||||| || | || || |||||| Sbjct 528962 CCAGATCATCACGGAAGCTGTCGAGATTGAGCAAGAGTTCCTCTCGGACGCCCTGCCCTG 529021 Query 47402 ATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCG 47461 | | | || |||||||| || | ||| | |||||||||| |||||||| || || Sbjct 529022 CGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTTGTCGCTGATCG 529081 Query 47462 CCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTAT 47521 ||| ||| | || | |||| ||| || || || || ||||| || || Sbjct 529082 CCTACTCCTCGCACTTGGCCACAGCAAGTACTACAACGCCACCAACCCCTTCGACTTCAT 529141 Query 47522 GAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | | ||||| || |||| |||||||| ||||| |||||||||||||| || || || Sbjct 529142 GGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGGTGACTA 529198 Score = 95.1 bits (104), Expect = 1e-14 Identities = 277/426 (65%), Gaps = 17/426 (4%) Strand=Plus/Plus Query 47160 GTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGA 47219 ||||||||| | |||||||| || || || || || || | | || | || Sbjct 494416 GTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGCTCAAGAAGCGCGGG 494475 Query 47220 GTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACC 47279 | |||||||||||||| || ||||||||| || || | ||||| ||| |||||||| Sbjct 494476 CTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCCCGTGACGAGGGCATGCACACC 494535 Query 47280 AACTTTGCCTGTCT-CTACTACAACA------CTAGAGTCGATCAAAAGTTGGACGTGCC 47332 |||| |||||| | || | ||| | | | | |||| | | | || | Sbjct 494536 GACTTCGCCTGTATGCTGCACGCACATCTCCGCAACAAGCCATCAC---TCGACCTTGTC 494592 Query 47333 CACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGC 47392 |||| | || | | ||||| |||| || ||| ||||| || | || || Sbjct 494593 CACC-------AGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTCTCAGACGC 494645 Query 47393 TCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGT 47452 || ||| | | | || |||||||| || | ||| | |||||||||| || || Sbjct 494646 CCTACCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGT 494705 Query 47453 CGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATT 47512 ||| |||||||| ||| | || | |||| ||| || || || || || Sbjct 494706 CGCTGACCGCCTACTCCTCGCACTCGGCCACGGCAAGTACTACAACGCCACCAACCCCTT 494765 Query 47513 CGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGG 47572 ||| || ||| | ||||| || |||| |||||||| ||||| |||||||||||||| || Sbjct 494766 CGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAGG 494825 Query 47573 CGAATA 47578 || || Sbjct 494826 TGACTA 494831 >seq2 Length=2712501 Score = 118 bits (130), Expect = 1e-21 Identities = 170/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 |||||| || || |||| |||| |||||| || | ||| ||||| || || || ||||| Sbjct 1333691 TACTGC-CCTCCACGTAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTA 1333633 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 |||| || ||| || ||| || | ||| || |||||| |||| | |||||||| || Sbjct 1333632 GTCGCTCAACGTCCGGCCATCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGGTC 1333573 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 || || || |||||||||||| ||| ||| ||| | |||| |||| ||||| | Sbjct 1333572 TGGTGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTG-TCGATCGTGTCGGATG 1333514 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || |||| || | || ||||| || ||||| || || || || |||||| Sbjct 1333513 ATTCTACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCATG 1333458 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | || | ||| | || ||||| || || || ||||| ||| Sbjct 1333230 TCCACCACGCAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1333171 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || ||||| || || ||| ||||||| |||||||| || ||||| Sbjct 1333170 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGG 1333111 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || ||||| | |||| |||||| | ||||| || Sbjct 1333110 AATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCAC 1333051 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || | ||| | || |||||||||| || ||||| || Sbjct 1333050 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTTACGAA 1333012 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| ||| || ||||| || || Sbjct 1305367 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 1305308 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || ||||| |||||||||||||| ||| || |||| Sbjct 1305307 GCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTG 1305248 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||||| || || | ||| | || |||||||||| ||| Sbjct 1305247 ACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTT 1305188 Query 127097 TTTACAAA 127104 || || || Sbjct 1305187 TTGACGAA 1305180 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| ||| || ||||| || || Sbjct 1361494 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 1361435 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || ||||| |||||||||||||| ||| || |||| Sbjct 1361434 GCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTG 1361375 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||||| || || | ||| | || |||||||||| ||| Sbjct 1361374 ACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTT 1361315 Query 127097 TTTACAAA 127104 || || || Sbjct 1361314 TTGACGAA 1361307 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| ||| || ||||| || || Sbjct 1459019 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 1458960 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || ||||| |||||||||||||| ||| || |||| Sbjct 1458959 GCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTG 1458900 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||||| || || | ||| | || |||||||||| ||| Sbjct 1458899 ACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTT 1458840 Query 127097 TTTACAAA 127104 || || || Sbjct 1458839 TTGACGAA 1458832 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | || | ||||||||| || || || ||||| ||| Sbjct 1333457 CCACCGCGGAGGCGAAGGACGAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGAA 1333398 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || || || || ||| | || | |||||||| || ||||| Sbjct 1333397 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGA 1333338 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| ||| ||||| |||| |||| |||||| | ||| || Sbjct 1333337 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG-TCGATGGTGTCGGAGGACTCAAC 1333279 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||| || || || || || || |||||||| Sbjct 1333278 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1333231 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| || || || || || || Sbjct 1305595 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCG 1305536 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | ||||| || || ||||| ||||||||||||||| ||| ||| |||| Sbjct 1305535 GCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTG 1305476 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | | ||| || |||| ||| | || |||||||| || || Sbjct 1305475 ACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 1305416 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 1305415 TTGACGAAGATCTGCAT 1305399 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| || || || || || || Sbjct 1361722 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCG 1361663 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | ||||| || || ||||| ||||||||||||||| ||| ||| |||| Sbjct 1361662 GCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTG 1361603 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | | ||| || |||| ||| | || |||||||| || || Sbjct 1361602 ACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 1361543 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 1361542 TTGACGAAGATCTGCAT 1361526 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| || || || || || || Sbjct 1459247 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCG 1459188 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | ||||| || || ||||| ||||||||||||||| ||| ||| |||| Sbjct 1459187 GCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTG 1459128 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | | ||| || |||| ||| | || |||||||| || || Sbjct 1459127 ACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 1459068 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 1459067 TTGACGAAGATCTGCAT 1459051 >seq19 Length=770886 Score = 84.2 bits (92), Expect = 2e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093 || ||| || ||| |||||| || | ||||||| || || ||||||||||| || || Sbjct 62828 CATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACGACTTGGAACTCGCCGGCCAGGAC 62887 Query 146094 GCGCCTCAGA-TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCT 146152 || | ||| || | |||||||||| ||||||| || |||| ||| || | |||| Sbjct 62888 ACGAC-GAGAGTAGATGTTGCTGGTGTACGGCTCAAAGCACTCATTGAACCCCATGATCT 62946 Query 146153 GCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||| || | || || ||||| ||| || |||| |||||| | ||||| || Sbjct 62947 GCGATGTGCTTGCTGTGGGCATAGGCGCGACGAGCAGAGAGTTGCGGACGCCATG 63001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499421047680