Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 102 7e-17 >seq2 Length=2712501 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | ||| | |||||||| || ||||| ||||| || |||||||| Sbjct 1305853 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTC 1305794 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || ||||| || || || ||| | || | || |||||||| || || Sbjct 1305793 AAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 1305734 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || ||||| ||||| || || | || | || | ||||| || || || || Sbjct 1305733 ATACCCTCCTTATCCTGAATCTTCGACTTCA-CGTTGTCGATCGTGTCTGATGATTCCAC 1305675 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || ||||| || || ||||||||||| Sbjct 1305674 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1305627 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | ||| | |||||||| || ||||| ||||| || |||||||| Sbjct 1361980 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTC 1361921 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || ||||| || || || ||| | || | || |||||||| || || Sbjct 1361920 AAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 1361861 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || ||||| ||||| || || | || | || | ||||| || || || || Sbjct 1361860 ATACCCTCCTTATCCTGAATCTTCGACTTCA-CGTTGTCGATCGTGTCTGATGATTCCAC 1361802 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || ||||| || || ||||||||||| Sbjct 1361801 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1361754 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | ||| | |||||||| || ||||| ||||| || |||||||| Sbjct 1459505 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTC 1459446 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || ||||| || || || ||| | || | || |||||||| || || Sbjct 1459445 AAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 1459386 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || ||||| ||||| || || | || | || | ||||| || || || || Sbjct 1459385 ATACCCTCCTTATCCTGAATCTTCGACTTCA-CGTTGTCGATCGTGTCTGATGATTCCAC 1459327 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || ||||| || || ||||||||||| Sbjct 1459326 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1459279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001889190720