Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 172 7e-38 seq135 96.9 4e-15 seq19 91.5 2e-13 >seq1 Length=3303888 Score = 172 bits (190), Expect = 7e-38 Identities = 446/665 (67%), Gaps = 20/665 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || ||||||||||||||||| ||||| || ||||| ||| |||||||| Sbjct 529199 GTAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCAT 529140 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || || ||||| | | ||| | | ||| || || || || |||||| Sbjct 529139 GAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCTGTGGCC--AA---GTGCGAGGAGT 529085 Query 127349 ---CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 ||||| | ||| |||| ||||||| |||| || | |||||| |||| || Sbjct 529084 AGGCGATCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGT 529025 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 || || || |||||| ||| |||| | | |||||| || ||||||||| | ||| Sbjct 529024 GCGCAGGGCAGGGCGTCCGAGAGGAACTCTTGCTCAATCTCGACAGCTTCCGTGATGATC 528965 Query 127466 GCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAA-GT-CTTGAAGAGTTCCACAGCAA 127523 ||| | ||| | || | ||||| | | || | || || | | || | Sbjct 528964 TGGTGGACGAGGTCGAGTGATGGCTTGTTGCGGAGATGTGCGTGCAGCATGCAG--GCGA 528907 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | || ||| | |||||||||||||||||||| || || |||||| || || |||| Sbjct 528906 AGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCA 528847 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643 |||| || |||||||||| |||||| || || |||||||||||||||||||| |||| Sbjct 528846 TGAGCCCGCGCTTCTTCAGCCAGAAGATGGCGGCGAATGAGCCAGAGAAGAAGATACCCT 528787 Query 127644 CCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC-AAACCAC 127702 | ||| ||||| || | ||||| | | |||| || | | || | | |||| Sbjct 528786 CGACAGCTGCGAAAGCGATGAGACGGCAGCCGAAGG-TCGATGCATCGTCGCTGATCCAC 528728 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA-G 127761 || | ||||| | ||||| || ||| || |||| | | | ||| || | |||| | Sbjct 528727 TTGAGTGCCCAATTGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAGG 528668 Query 127762 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 127821 | | | || || || || ||||||| | || |||||| ||| || || ||| Sbjct 528667 TATGTGCGTTGGCGA-GGTTCACTGATGTAGGTGTCGATGAGTAGTGAGTAGGTCTCGGA 528609 Query 127822 GTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTA 127880 ||||| | | ||| || | ||| | ||||||| |||| || ||| ||| || | Sbjct 528608 GTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGAGCGTCGGGTATTTGGA 528550 Query 127881 CCTCA 127885 ||||| Sbjct 528549 CCTCA 528545 Score = 138 bits (152), Expect = 1e-27 Identities = 402/605 (66%), Gaps = 18/605 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || ||||||||||||||||| ||||| || ||||| ||| |||||||| Sbjct 494832 GTAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCAT 494773 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGT--TGGCACCCCAATCTGTTTGAGGA 127346 || || || ||||| | | ||| | | ||| |||| | | | | ||| | Sbjct 494772 GAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCCGTGGC---CGAGTGCGAG-GAGTA 494717 Query 127347 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 127406 | || || | |||| |||| ||||||| |||| || | |||||| |||| || Sbjct 494716 GGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTG 494657 Query 127407 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGG 127466 || || || ||||| ||| |||| | | ||| || || ||||||||| | ||| Sbjct 494656 CGCAGGGTAGGGCGTCTGAGAGGAACTCTTGCTCGATCTCGACAGCTTCCGTGATGATCT 494597 Query 127467 CGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAA-GT-CTTGAAGAGTTCCACAG-CAA 127523 ||| | | ||| | || | ||||| | | || | || || | |||| | | Sbjct 494596 GGTGGACAAGGTCGAGTGATGGCTTGTTGCGGAGATGTGCGTGCAGCAT---ACAGGCGA 494540 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | || ||| | |||||||||||||| ||||| || || |||||| || || |||| Sbjct 494539 AGTCGGTGTGCATGCCCTCGTCACGGGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCA 494480 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643 | || || |||||||| | |||||| || || || || ||||||||||| || |||| Sbjct 494479 TCAGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCGAACGAACCAGAGAAGAAAATGCCCT 494420 Query 127644 CCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC-AAACCAC 127702 | ||| || || |||| ||||| | | |||| || | | || | | |||| Sbjct 494419 CGACAGCTGCAAAGGCAATGAGACGGCAGCCGAAGG-TCGATGCGTCGTCGCTGATCCAC 494361 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA-G 127761 || | ||||| | ||||| || ||| || |||| | | | ||| || | ||||| | Sbjct 494360 TTTAGTGCCCAGTTGGCCTTCTTGCGGATGCACGGGATGTTGTCGATGGCGTTAAAGAGG 494301 Query 127762 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 127821 | | | || || || || ||||||| | || |||||| ||| || || ||| Sbjct 494300 TATGTGCGTTGGCGA-GGTTCGCTGATGTAGGTGTCGATGAGTAGTGAGTAGGTCTCGGA 494242 Query 127822 GTGGA 127826 ||||| Sbjct 494241 GTGGA 494237 >seq135 Length=6449 Score = 96.9 bits (106), Expect = 4e-15 Identities = 306/456 (67%), Gaps = 25/456 (5%) Strand=Plus/Minus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 || || ||||| || || | |||||| | ||| || | ||| || ||||| | ||| Sbjct 2469 TCGAAACGACCCGGTCGCATGAGGGCCTTGTCTAGAACATCTGGTCGATTCGTGCCAGCG 2410 Query 12765 ATGACAACGA--TGC-CCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 | ||| || | || |||| ||| |||||| ||||||||||| | || |||||| Sbjct 2409 AGGACGACAACTTGATCCGTAGTGTT---GAAGCCGTCCATCTCAGTGAGGATCTGATTG 2353 Query 12822 ATGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACCCGCACTGCG-TTGC-TTACC 12877 | ||| || || || || || ||| | || || || ||| |||| || || Sbjct 2352 AGGGTGCTCTCGCGCTCGTCGTTACCGCCACCGAACGACT-GCTTTGCTCTTGCCTTGCC 2294 Query 12878 GACGGCGTCAATTTCGTCAATGAAAACGATACACGGT-TGATTTTCACGGGCAACTTCAA 12936 || |||||||| ||||||||||| | ||| |||||| | ||| || ||| | | Sbjct 2293 GATAGCGTCAATCTCGTCAATGAAGATGATGCACGGTGTCGACTTC-CGTGCATTGGCGA 2235 Query 12937 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGG 12996 | | ||||||||| | | |||||||||||||||||||||||| || | | | | Sbjct 2234 ACAGATCTCGCACACGTGAAGGACCGACACCCACAAACATCTCCACGAACTCAGACCCTG 2175 Query 12997 A-ACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 13055 | || | || |||||| ||| || || || || | || ||||| || ||||| Sbjct 2174 ACACGCT-GAAGAAGGGCACGCCAGACTCGCCAGCAGTCGCCTTCGCGAGCAGCGTCTTA 2116 Query 13056 CCCGTCCCTGG-TTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA--CTTC-- 13110 || || || || || | | || | ||||| || |||||| | |||||| |||| Sbjct 2115 CCAGTACCGGGCGGACCGCTCAAG-ATCGCACCTCGAGGGATCTTTGCACCAAGCTTCGT 2057 Query 13111 CAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCACGA 13146 ||| | |||||||||||| || || | ||||| Sbjct 2056 GAAAAT----CTCGGGTTGTTTGAGGAACTGCACGA 2025 >seq19 Length=770886 Score = 91.5 bits (100), Expect = 2e-13 Identities = 253/385 (66%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 115660 TGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG 115719 ||||| |||||||||||| || ||||| || | ||| | || | | | || Sbjct 62655 TGGGACTGATCGATGAAGGCGCCACGATCGGCTGACATCTGGATGATGTTGCGCTGGCTG 62714 Query 115720 ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG 115779 || ||||| ||||| | || || | ||| || || || ||||||| || ||| Sbjct 62715 ATCTCCCAGACAGTCTTATACAGCTCCTTGATCTCGTCGGGGATATTGGGAATGCGCTGG 62774 Query 115780 ATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTC 115839 ||||||||||| | || ||| | | |||||| | | |||||| || || | Sbjct 62775 ATAGAGCCACCATCTGCGATGATGCGGTTCTTCATGTTGTCGCTCCAGAGGCCCATGTCG 62834 Query 115840 TTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCG 115895 || |||| | | ||| | ||||| || ||||| || || ||| || Sbjct 62835 ACAAGGTCCTTGAGCAGCCAGGGG----TTGACGACTTGGAACTCGCCGGCCAGGACACG 62890 Query 115896 TCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGG 115954 | ||| ||||||||| | ||||| |||||||||||||||||| |||| ||| || | Sbjct 62891 ACG-AGAGTAGATGTTGCTGGTGTACGGCTCAAAGCACTCATTGAACCCCATGATCTGCG 62949 Query 115955 CTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAA 116014 |||| ||||||||||| || || | ||| || |||||||| || | | | Sbjct 62950 ATGTGCTTGCTGTGGGCATAGGCGCGACGAGCAGAGAGTTGCGGACGCCATGCACTGCGA 63009 Query 116015 TGCGTTCCTTGAGGGCGTCCCAGTC 116039 | || |||||||||| ||||| || Sbjct 63010 TCCGCGCCTTGAGGGCTTCCCAATC 63034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505420829120