Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045.
2_202017-04-03] 232 sequences; 44,765,267 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq2 149 7e-31
seq29 116 4e-21
seq23 113 5e-20
>seq2
Length=2712501
Score = 149 bits (164), Expect = 7e-31
Identities = 151/194 (78%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| |||| ||||| ||||||||||||||
Sbjct 1333422 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 1333363
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||||||| | || | || |||||||||| ||||||| ||||| |||
Sbjct 1333362 AATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 1333304
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || || | |||||||| ||||| || || || || |
Sbjct 1333303 TGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGA 1333244
Query 46581 CAAAGATTTGCATT 46594
| ||||| ||||||
Sbjct 1333243 CGAAGATCTGCATT 1333230
Score = 140 bits (154), Expect = 4e-28
Identities = 146/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| |||| ||||| ||||||||||||||
Sbjct 1305590 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 1305531
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||| ||||| | || | || |||||||||| ||||||| ||||| |
Sbjct 1305530 AATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATT 1305471
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || || || || | |||||||| ||||| || || || || ||
Sbjct 1305470 GTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 1305411
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 1305410 GAAGATCTGCAT 1305399
Score = 140 bits (154), Expect = 4e-28
Identities = 146/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| |||| ||||| ||||||||||||||
Sbjct 1361717 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 1361658
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||| ||||| | || | || |||||||||| ||||||| ||||| |
Sbjct 1361657 AATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATT 1361598
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || || || || | |||||||| ||||| || || || || ||
Sbjct 1361597 GTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 1361538
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 1361537 GAAGATCTGCAT 1361526
Score = 140 bits (154), Expect = 4e-28
Identities = 146/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| |||| ||||| ||||||||||||||
Sbjct 1459242 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 1459183
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||| ||||| | || | || |||||||||| ||||||| ||||| |
Sbjct 1459182 AATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATT 1459123
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || || || || | |||||||| ||||| || || || || ||
Sbjct 1459122 GTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 1459063
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 1459062 GAAGATCTGCAT 1459051
Score = 136 bits (150), Expect = 4e-27
Identities = 143/187 (76%), Gaps = 6/187 (3%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| | || ||||||||||||||||||||
Sbjct 1305362 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 1305303
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||||||||||||||| | || | || ||||||||| |||||| |||||| |
Sbjct 1305302 GATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATT 1305243
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| |||| ||||| || | |||||||| ||||| |||| |||||
Sbjct 1305242 GTCGATGGTGTCGGAGCTC---TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTTTT 1305186
Query 46579 AACAAAG 46585
|| |||
Sbjct 1305185 GACGAAG 1305179
Score = 136 bits (150), Expect = 4e-27
Identities = 143/187 (76%), Gaps = 6/187 (3%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| | || ||||||||||||||||||||
Sbjct 1361489 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 1361430
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||||||||||||||| | || | || ||||||||| |||||| |||||| |
Sbjct 1361429 GATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATT 1361370
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| |||| ||||| || | |||||||| ||||| |||| |||||
Sbjct 1361369 GTCGATGGTGTCGGAGCTC---TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTTTT 1361313
Query 46579 AACAAAG 46585
|| |||
Sbjct 1361312 GACGAAG 1361306
Score = 136 bits (150), Expect = 4e-27
Identities = 143/187 (76%), Gaps = 6/187 (3%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| | || ||||||||||||||||||||
Sbjct 1459014 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 1458955
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||||||||||||||| | || | || ||||||||| |||||| |||||| |
Sbjct 1458954 GATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATT 1458895
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| |||| ||||| || | |||||||| ||||| |||| |||||
Sbjct 1458894 GTCGATGGTGTCGGAGCTC---TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTTTT 1458838
Query 46579 AACAAAG 46585
|| |||
Sbjct 1458837 GACGAAG 1458831
Score = 131 bits (144), Expect = 2e-25
Identities = 142/187 (76%), Gaps = 6/187 (3%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| | || ||||||||||||||||||||
Sbjct 1333194 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 1333135
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||||||||||||||| | || | || ||||||||| |||||| |||||| |
Sbjct 1333134 GATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATT 1333075
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| |||| ||||| || | |||||||| ||||| |||| || ||
Sbjct 1333074 GTCGATGGTGTCGGAGCTC---TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTT 1333018
Query 46579 AACAAAG 46585
|| |||
Sbjct 1333017 TACGAAG 1333011
Score = 125 bits (138), Expect = 8e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | || ||||| ||||| |||| || |||||| ||||| |||||||||
Sbjct 1333685 CCTCCACGTAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 1333626
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || || | || || | |||||| || ||||| || | ||||||||||| | ||
Sbjct 1333625 AACGTCCGGCCATCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGTGGG 1333566
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 46545
| | |||||||||| ||||||| ||| | ||| | | | ||||||| ||||| ||
Sbjct 1333565 ATACCCTCCTTGTCCTGGATCTTCGACTTCA-CGTTGTCGATCGTGTCGGATGATTCTAC 1333507
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||||||| ||||| || || || || || |||||||||||
Sbjct 1333506 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 1333459
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||| | ||||| |||| || |||||| ||||| ||||| |||
Sbjct 1305853 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTC 1305794
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || | |||| || | |||||| || ||||| || | ||||||||||| | ||
Sbjct 1305793 AAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 1305734
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545
| | |||||| ||| |||||| ||| | ||| | | | |||||| ||||||||
Sbjct 1305733 ATACCCTCCTTATCCTGAATCTTCGACTTCA-CGTTGTCGATCGTGTCTGATGATTCCAC 1305675
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||||||| ||||| || || || || || || ||||||||
Sbjct 1305674 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1305627
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||| | ||||| |||| || |||||| ||||| ||||| |||
Sbjct 1361980 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTC 1361921
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || | |||| || | |||||| || ||||| || | ||||||||||| | ||
Sbjct 1361920 AAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 1361861
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545
| | |||||| ||| |||||| ||| | ||| | | | |||||| ||||||||
Sbjct 1361860 ATACCCTCCTTATCCTGAATCTTCGACTTCA-CGTTGTCGATCGTGTCTGATGATTCCAC 1361802
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||||||| ||||| || || || || || || ||||||||
Sbjct 1361801 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1361754
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||| | ||||| |||| || |||||| ||||| ||||| |||
Sbjct 1459505 CCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTC 1459446
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || | |||| || | |||||| || ||||| || | ||||||||||| | ||
Sbjct 1459445 AAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 1459386
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545
| | |||||| ||| |||||| ||| | ||| | | | |||||| ||||||||
Sbjct 1459385 ATACCCTCCTTATCCTGAATCTTCGACTTCA-CGTTGTCGATCGTGTCTGATGATTCCAC 1459327
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||||||| ||||| || || || || || || ||||||||
Sbjct 1459326 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1459279
>seq29
Length=482220
Score = 116 bits (128), Expect = 4e-21
Identities = 85/99 (86%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||||||||||||||| || ||||| |||| ||||||||||||||||||||
Sbjct 360677 CTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 360618
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
||||||||||||||||| | || | | |||||||||
Sbjct 360617 GATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 360579
Score = 113 bits (124), Expect = 5e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| || | || |||||| ||||| ||||||||||| || ||||| ||
Sbjct 457305 CGCAGGACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCG 457246
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| |||||||||||||||||||| ||||||||||||||||| | || | | |||||||
Sbjct 457245 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTG 457186
Query 46499 TC 46500
||
Sbjct 457185 TC 457184
>seq23
Length=594546
Score = 113 bits (124), Expect = 5e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||| || || || | | || || |||||||| |||||||| |
Sbjct 495720 CCTTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 495779
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||||||||||||||| | ||| | | |||||||||| |||||| |||||| |
Sbjct 495780 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 495839
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||||| ||| ||||| || | ||||| || |||||||| || || || || |
Sbjct 495840 CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGA 495899
Query 46584 AG 46585
||
Sbjct 495900 AG 495901
Score = 107 bits (118), Expect = 2e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || |||||||| |||||||| ||||||||||||||||| | ||| | | |||||||
Sbjct 438910 TCCTCAAGCTGCTTTCCGGCGAAAATCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTG 438969
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| |||||| | | | ||||||| ||| ||||| || | |||||
Sbjct 438970 TCCTGGATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCCACCTCAAGGGTGATA 439029
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAG 46585
|| |||||||| || || || || |||
Sbjct 439030 GTCTTGCCCGTGAGGGTCTTGACGAAG 439056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565236760808640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |