Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 seq112 105 8e-18 seq6 105 8e-18 >seq1 Length=3303888 Score = 134 bits (148), Expect = 2e-26 Identities = 300/442 (68%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242 || ||| |||| || || ||| |||||||||||||||||||| || ||| ||| || Sbjct 528762 CGTCTCATCGCTTTCGCAGCTGTCGAGGGTATCTTCTTCTCTGGCTCATTCGCCGCCATC 528821 Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302 | ||||| |||||||| || |||||||| || ||| ||||||||||||||| ||||| Sbjct 528822 TTCTGGCTGAAGAAGCGCGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCC 528881 Query 102303 CGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGA-ACTTTTCAAATTATTGCGTATTAA 102361 ||||||||||| | ||| || || || || | || | | | || | || Sbjct 528882 CGTGACGAGGGCATGCACACCGACTTCGC-CTGCATGCTGCACGCACATCTCCGCAACAA 528940 Query 102362 ACCAACGACT-GAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGAT 102420 ||| | ||| || | || || | | |||||| || ||||||||| | | | Sbjct 528941 GCCATC-ACTCGACCTCGTCCACCAGATCATCACGGAAGCTGTCGAGATTGAGCAAGAGT 528999 Query 102421 TCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCGAAT 102480 || | | ||| ||||| || ||||| || |||| ||||| | | |||| | | | Sbjct 529000 TCCTCTCGGACGCCCTGCCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGT 529059 Query 102481 ATATTGAGTATGTATCTGATAG-ATTGTTGAAGCAGATCGGGGTGCCTCCAATT--TGGA 102537 | || |||| ||| ||||| | | | ||| | || | ||| | | | Sbjct 529060 ACATCGAGTTTGTCGCTGATCGCCTACTCCTCGCA---CTTGGCCACAGCAAGTACTACA 529116 Query 102538 ACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCT 102597 || ||| || || || ||||||||||||||||| ||||| ||| ||||| ||||||| Sbjct 529117 ACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCT 529176 Query 102598 TCGAAAAGAGGGTTGGGGACTA 102619 |||| ||| | || || ||||| Sbjct 529177 TCGAGAAGCGCGTAGGTGACTA 529198 Score = 120 bits (132), Expect = 4e-22 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242 || ||| | || ||||| ||| ||||| || |||||||||||||| ||| |||||| Sbjct 494395 CGTCTCATTGCCTTTGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATC 494454 Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302 | |||||||||||||| || || ||||| || ||| ||||||||||||||| || || Sbjct 494455 TTCTGGCTCAAGAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCC 494514 Query 102303 CGTGACGAGGG 102313 ||||||||||| Sbjct 494515 CGTGACGAGGG 494525 >seq112 Length=9096 Score = 105 bits (116), Expect = 8e-18 Identities = 308/463 (67%), Gaps = 31/463 (7%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 || ||||| ||||| || | ||| || | ||||||| ||| |||||||| | ||| Sbjct 5119 TCGAAGCGCCCTGGTCGCATGAGTGCTTTGTCAAGGACATCTGGTCGATTCGTGCCAGCG 5060 Query 15948 ATGACAACAATACCTGTTTCGT--TATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 | || || | | || | ||| | | || || |||||||||||||||| |||||| | Sbjct 5059 AGTACGACGA--CTTGGTCCGTGGTGTTGAAGCCGTCCATCTCTGTCAAAATCTGGTTCA 5002 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGC--ACTGCGTTGCT------- 16056 || || || || ||||| | ||| ||| ||||| | ||| Sbjct 5001 GCGTACTCTCGCGCTCGTCATTGCC------ACCTCCAAATGACTGCTTCGCTCTTGCCT 4948 Query 16057 TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG--GTTGATTTTCGCGAGCGAC 16114 |||| | ||||| |||||||||||||||| |||||||| || || ||| || || Sbjct 4947 TTCCAATAGCATCGATCTCATCAATGAAGATGATGCATGGTGTCGACTTT--CGTGCATT 4890 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 | || || || || ||||| | || ||||| || ||||||||||| || | | Sbjct 4889 GGCGAAAAGGTCTCGCACACGGGAAGGACCGACACCGACGAACATCTCCACGAACTCAGA 4830 Query 16175 GGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 | || || | || ||| || ||| ||| || || || ||||| ||||| | | Sbjct 4829 TCCCGACACGCT-GAAGAATGGCACACCAGACTCGCCAGCCGTGGCTTTTGCGAGTAACG 4771 Query 16234 TCTTACCCGTACCTGGCTTACCCGC-GAGGAGGGCACCTCGTGGAATCTTGGCGCCA--C 16290 ||||||| ||||| || | |||| | || ||||||| |||||||| |||||| | Sbjct 4770 TCTTACCAGTACCAGG-TGGTCCGCTCAAGATCGCACCTCTAGGAATCTTCGCGCCAAGC 4712 Query 16291 TTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 || | | ||||||| ||||| || || | ||||| ||| Sbjct 4711 TT--GGTGAAGATCTCAGGCTGCTTGAGGAATTGCACAAACTC 4671 >seq6 Length=1760288 Score = 105 bits (116), Expect = 8e-18 Identities = 226/328 (69%), Gaps = 20/328 (6%) Strand=Plus/Minus Query 176735 CCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCG- 176793 |||||||| || |||||||||| || ||||||||||||||||||| |||| || || Sbjct 198946 CCCTTGATATGCGAACCGTCGTGGTCTTGATCCGTCATGATCATGAGATGACCGTATCGC 198887 Query 176794 --AAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGA-G 176850 | || || ||||| |||||||| || || | ||||| || |||||||| | Sbjct 198886 AAACCCTTGG---TGTCTTGGTAGTCCTTCTTATGCTGCAAACCCATGAACTTCTTGATG 198830 Query 176851 ATCGTTGAA-CTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTAC 176909 || |||| ||| |||| || || ||| || || ||||| || || ||| Sbjct 198829 TTC--TGAATTTCTGCGTTTTTTGAGATCTGGTCGATGGACGCATCTCGTACGTTCAGCA 198772 Query 176910 ACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAA 176969 ||| ||||| | |||||||||||| || |||| || || || | | || || | Sbjct 198771 TCTTACCACGCAAAGGGAAGACACCAAAGAGATCTGGATTCACTACCGCACGGCCAGCCA 198712 Query 176970 CCGCGAG---CGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTGCCAGATT 177026 || || || | ||||| ||||| || |||| |||||| |||||||| |||| Sbjct 198711 GGGCTAGTAACGAT---GCAGAGTCACCTTCAGTCAGGATGAGGGTACACTT-CCAG-CC 198657 Query 177027 GTGC--CGTACCCGCCTTGTTCGCATCA 177052 || | || || |||||||| |||||| Sbjct 198656 GTCCTTGGTGCCAGCCTTGTTGGCATCA 198629 Score = 95.1 bits (104), Expect = 2e-14 Identities = 219/324 (68%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 176732 AGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATAC 176791 ||||||||||| || ||||| |||| ||| ||||||||||||||| || |||| || Sbjct 172945 AGACCCTTGATATGCGAACCATCGTGATCTTGATCCGTCATGATCATAAGGTGACCGTAT 172886 Query 176792 CGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGA 176851 || || | ||||| |||||||| || || | |||| || |||||||| Sbjct 172885 CGCAGACCTTTGGTGTCTTGGTAGTCCTTCTTATGCTGCAAGCCCATGAACTTCTTGATG 172826 Query 176852 TCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACA- 176910 | | || |||| ||| || || ||| || || || || || ||||| | || Sbjct 172825 TTCTGGATCTCTGCGTTCTTTGAGATCTGGTCGATGGATGCGTCTCGTACATT-TAGCAT 172767 Query 176911 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAAC 176970 ||| ||||| || || || || ||| || |||| || || || | | ||||| | Sbjct 172766 CTTACCACGCAGGGGAAATACGCCGAAGAGATCTGGATTCACTACTGCACGGCCCGCCAG 172707 Query 176971 CGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTGCCA--GATTGT 177028 || ||| ||||| ||||| || |||| ||||| |||||||| ||| || | Sbjct 172706 GGCTAGCAACGATGCAGAGTCACCTTCAGTCAGAATGAGGGTACACTT-CCATCCATCCT 172648 Query 177029 GCCGTACCCGCCTTGTTCGCATCA 177052 || || ||||||||||||||| Sbjct 172647 -TGGTGCCAGCCTTGTTCGCATCA 172625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740599847040