Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045.
2_202017-04-03] 232 sequences; 44,765,267 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 4e-28
seq112 104 3e-17
seq135 102 1e-16
seq2 100 3e-16
seq19 96.9 4e-15
seq16 84.2 3e-11
>seq1
Length=3303888
Score = 140 bits (154), Expect = 4e-28
Identities = 356/534 (67%), Gaps = 11/534 (2%)
Strand=Plus/Minus
Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267
|||||||| || | ||| |||||||| |||||||| || |||| |||||||| |||||
Sbjct 529198 TAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCATG 529139
Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGA--TTGGTGGTTGACCAACTTGTTTCAGAAGAC 119325
||||| || || || ||| ||| || ||| || || |||| | || || |
Sbjct 529138 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCTG--TGGCCAAGTGCGAGGAGTAGGC 529081
Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385
|||| | |||| ||||||| || | | |||| | | ||||| || | || |
Sbjct 529080 GATCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGCGC 529021
Query 119386 ACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445
| || || || || || ||| | | ||| ||||| |||||||| | | ||| ||
Sbjct 529020 AGGGCAGGGCGTCCGAGAGGAACTCTTGCTCAATCTCGACAGCTTCCGTGATGATCTGGT 528961
Query 119446 GAAT-AGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCT 119504
| | || | || ||||| ||||| | | || || | ||| || ||
Sbjct 528960 GGACGAGGTCGAGT-GATGGCTTGTTGCGGAGATGTGCGTGCAGCATGCAGGCGAAGTCG 528902
Query 119505 TGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGT 119564
|| | || || || || ||||||||||| || |||| || || ||||||||
Sbjct 528901 GTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGC 528842
Query 119565 CCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACA 119624
|| | ||||| ||||| |||||||| || ||||| |||||||| ||||| |||
Sbjct 528841 CCGCGCTTCTTCAGCCAGAAGATGGCGGCGAATGAGCCAGAGAAGAAGATACCCTCGACA 528782
Query 119625 CAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC---GAACCACTTGAG 119680
|||||||||| ||||| |||| |||||||| | | ||| || |||||||||
Sbjct 528781 GCTGCGAAAGCGATGAGACG-GCAGCCGAAGGTCGATGCATCGTCGCTGATCCACTTGAG 528723
Query 119681 AGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734
||||| |||||||| |||||||||| | | |||||| | ||| ||
Sbjct 528722 TGCCCAATTGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAG 528669
>seq112
Length=9096
Score = 104 bits (114), Expect = 3e-17
Identities = 275/411 (67%), Gaps = 13/411 (3%)
Strand=Plus/Minus
Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647
||| ||| |||||||| ||||| | || |||||| | ||| || ||||| || |||
Sbjct 5037 TGTTGAAGCCGTCCATCTCTGTCAAAATCTGGTTCAGCGTACTCTCGCGCTCGTCATTGC 4978
Query 11648 -AGGGCATACCACCTGCCGAACGCTT--CTTACCGACAGCGTCAATCTCATCGATGAATA 11704
| | | |||| | ||| ||| || | ||| || |||||||| ||||| |
Sbjct 4977 CACCTCCAAATGACTGCTTCGCTCTTGCCTTTCCAATAGCATCGATCTCATCAATGAAGA 4918
Query 11705 CGATACACGGTTGGTTGGCA--CGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCC 11762
||| || ||| || | | ||||| | ||||||| || || ||||| | ||
Sbjct 4917 TGATGCATGGT--GTCGACTTTCGTGCATTGGCGAAAAGGTCTCGCACACGGGAAGGACC 4860
Query 11763 AACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAG 11821
||||| ||||||||||| ||||| | | | || || ||||| ||| || ||| ||
Sbjct 4859 GACACCGACGAACATCTCCACGAACTCAGATCCCGACACGCTGAA-GAATGGCACACCAG 4801
Query 11822 ACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAA 11881
|||| ||||| ||||| ||||| | |||||||| |||||||||| || | |
Sbjct 4800 ACTCGCCAGCCGTGGCTTTTGCGAGTAACGTCTTACCAGTACCAGGTGGTCCGCTCAAGA 4741
Query 11882 GGGCGCCACGGGGGATCTTGGCACCA--CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939
|| || | || ||||| || ||| ||| | || |||||||| |||||||||
Sbjct 4740 TCGCACCTCTAGGAATCTTCGCGCCAAGCTT--GGTGAAGATCTCAGGCTGCTTGAGGAA 4683
Query 11940 GTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATC 11990
| ||||| |||| | || |||||| ||| || || |||||||
Sbjct 4682 TTGCACAAACTCCATGATCTCGGTCTTGGCTTCGTCCATGCCAGCAACATC 4632
>seq135
Length=6449
Score = 102 bits (112), Expect = 1e-16
Identities = 306/460 (67%), Gaps = 23/460 (5%)
Strand=Plus/Minus
Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565
||||||||||| || || | || || | || |||| ||| || || || | ||
Sbjct 2469 TCGAAACGACCCGGTCGCATGAGGGCCTTGTCTAGAACATCTGGTCGATTCGTGCCAGCG 2410
Query 11566 ATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATC 11625
| ||| |||| | | | ||| ||| |||||||| || ||||| | ||| ||||
Sbjct 2409 AGGACGACAACTTGATCCGTAGTGTTGAAGCCGTCCATCTCAGTGAGGATCTGATTGAGG 2350
Query 11626 GTCTGTTCACGCTCATCGTTGGAGGGCATACC--AC--CTGCCGAACGCTT--CTTACCG 11679
|| || ||||| ||||| | || ||| || |||| | ||| ||| |||
Sbjct 2349 GTGCTCTCGCGCTCGTCGTT--ACCGCC-ACCGAACGACTGCTTTGCTCTTGCCTTGCCG 2293
Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGC--ACGTGCCTGTTCGA 11737
| |||||||||||| || ||||| | ||| |||||| || | | ||||| | |||
Sbjct 2292 ATAGCGTCAATCTCGTCAATGAAGATGATGCACGGT--GTCGACTTCCGTGCATTGGCGA 2235
Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797
| || || || ||||| | || ||||| || |||||||| ||||| | | | |
Sbjct 2234 ACAGATCTCGCACACGTGAAGGACCGACACCCACAAACATCTCCACGAACTCAGACCCTG 2175
Query 11798 A-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856
| || ||||| |||||| || |||||| ||||| | || ||||| || ||||||
Sbjct 2174 ACACGCTGAA-GAAGGGCACGCCAGACTCGCCAGCAGTCGCCTTCGCGAGCAGCGTCTTA 2116
Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA--CTTC--C 11912
|| ||||| || | ||| | | || || || |||||||| |||||| ||||
Sbjct 2115 CCAGTACCGGGCGGACCGCTCAAGATCGCACCTCGAGGGATCTTTGCACCAAGCTTCGTG 2056
Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952
||| | ||| || | |||||||| | ||| | ||||
Sbjct 2055 AAAAT----CTCGGGTTGTTTGAGGAACTGCACGAACTCC 2020
>seq2
Length=2712501
Score = 100 bits (110), Expect = 3e-16
Identities = 275/416 (66%), Gaps = 33/416 (8%)
Strand=Plus/Plus
Query 11589 GTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTG-TTCACGCT--CATCGTT 11645
|||||| ||||||| || || || ||||| |||| |||||| || || || |||
Sbjct 1482897 GTCGAAGCCGTCCAACTCCGTCAGCAGCTGATTGAGCGTCTGCTTGGCGTATGCAGCGTC 1482956
Query 11646 GGAGGGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATAC 11705
| |||| | | | ||||| || || ||||||| |||||||||||| |
Sbjct 1482957 GC-GGGCGTGACGCTTGCCG-----------CCTACTGCGTCAAGCTCATCGATGAAGAT 1483004
Query 11706 GATACACGGTTGG----TTGGCACGTGC--CTGTTCGAAAAGTTCACGTACACGCTTCGC 11759
||| || ||| |||||||| || | || ||| || || || || ||||| ||
Sbjct 1483005 GAT----GGCTGGGCTTTTGGCACGAGCAGCAGT--GAAGAGGTCGCGGACGCGCTTGGC 1483058
Query 11760 TCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATT 11819
|| ||||| ||| | ||||| |||| | | | |||| | | ||| || ||
Sbjct 1483059 ACCGACACCAACGTAGATCTCGTCGAACTCGGAGCCAGACATGTAGAAGAAAGGTACGCC 1483118
Query 11820 AGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAG 11879
| ||| || || | || ||||||||||| |||||||| ||||| || | ||| | |||
Sbjct 1483119 TGCCTCGCCTGCAACAGCACGAGCGAGGAGCGTCTTACCAGTACCGGGAGGACCTGAGAG 1483178
Query 11880 AAGGGCGCCACGGGGGATCTTGGCACCA---CTTCCAAAGTAGCGCTCAGGCTTCTTGAG 11936
|| | || ||| | ||| ||||| ||| | ||| ||| ||| ||| |
Sbjct 1483179 CAGCACACCCTTGGGCAGCTTACCACCAAGCGATCC---GAAGCTCTCGGGCGACTTCAA 1483235
Query 11937 GAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGG 11992
||| ||||||| ||| | || |||||||| || || | ||| | ||||||||
Sbjct 1483236 GAATTCCACAACCTCTTGCAGCTCCTCCTTCGCCTCATCAACACCATGAACATCGG 1483291
>seq19
Length=770886
Score = 96.9 bits (106), Expect = 4e-15
Identities = 236/354 (67%), Gaps = 8/354 (2%)
Strand=Plus/Plus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559
||| | |||||| |||||||||||||| |||||||| || | ||| | ||||||
Sbjct 62645 GTTTAGCGACTGGGACTGATCGATGAAGGCGCCACGATCGGCTGACATCTGGATGATGTT 62704
Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619
||||| || |||||||||||||| |||| | |||||| || ||||| || |
Sbjct 62705 GCGCTGGCTGATCTCCCAGACAGTCTTATACAGCTCCTTGATCTCGTCGGGGATATTGGG 62764
Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCG-ACCAGA 109678
||| || |||||||||||| | | ||| | | |||||| | | ||| |||||
Sbjct 62765 AATGCGCTGGATAGAGCCACCATCTGCGATGATGCGGTTCTTCATGT-TGTCGCTCCAGA 62823
Query 109679 GACCGACCTTTTTGAGATCGTCAACAAGATGC---TTGTTGACCACGACAAATTCACCAG 109735
| | || | | || | ||| || || |||||| || || || || |
Sbjct 62824 G---GCCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACGACTTGGAACTCGCCGG 62880
Query 109736 CAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTA 109795
| || || || ||||||||| | ||||| || || || ||||||||| || |
Sbjct 62881 CCAGGACACGACGAGAGTAGATGTTGCTGGTGTACGGCTCAAAGCACTCATTGAACCCCA 62940
Query 109796 GGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849
||| || | ||| ||||||||||| || || | ||| ||| ||| ||||
Sbjct 62941 TGATCTGCGATGTGCTTGCTGTGGGCATAGGCGCGACGAGCAGAGAGTTGCGGA 62994
>seq16
Length=936305
Score = 84.2 bits (92), Expect = 3e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 656155 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGT 656213
Score = 84.2 bits (92), Expect = 3e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 749336 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGT 749394
Score = 84.2 bits (92), Expect = 3e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 791110 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGT 791168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588974291969600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |