Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 140 4e-28 seq112 104 3e-17 seq135 102 1e-16 seq2 100 3e-16 seq19 96.9 4e-15 seq16 84.2 3e-11 >seq1 Length=3303888 Score = 140 bits (154), Expect = 4e-28 Identities = 356/534 (67%), Gaps = 11/534 (2%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||||| || | ||| |||||||| |||||||| || |||| |||||||| ||||| Sbjct 529198 TAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCATG 529139 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGA--TTGGTGGTTGACCAACTTGTTTCAGAAGAC 119325 ||||| || || || ||| ||| || ||| || || |||| | || || | Sbjct 529138 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCTG--TGGCCAAGTGCGAGGAGTAGGC 529081 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 |||| | |||| ||||||| || | | |||| | | ||||| || | || | Sbjct 529080 GATCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGCGC 529021 Query 119386 ACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 | || || || || || ||| | | ||| ||||| |||||||| | | ||| || Sbjct 529020 AGGGCAGGGCGTCCGAGAGGAACTCTTGCTCAATCTCGACAGCTTCCGTGATGATCTGGT 528961 Query 119446 GAAT-AGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCT 119504 | | || | || ||||| ||||| | | || || | ||| || || Sbjct 528960 GGACGAGGTCGAGT-GATGGCTTGTTGCGGAGATGTGCGTGCAGCATGCAGGCGAAGTCG 528902 Query 119505 TGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGT 119564 || | || || || || ||||||||||| || |||| || || |||||||| Sbjct 528901 GTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGC 528842 Query 119565 CCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACA 119624 || | ||||| ||||| |||||||| || ||||| |||||||| ||||| ||| Sbjct 528841 CCGCGCTTCTTCAGCCAGAAGATGGCGGCGAATGAGCCAGAGAAGAAGATACCCTCGACA 528782 Query 119625 CAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC---GAACCACTTGAG 119680 |||||||||| ||||| |||| |||||||| | | ||| || ||||||||| Sbjct 528781 GCTGCGAAAGCGATGAGACG-GCAGCCGAAGGTCGATGCATCGTCGCTGATCCACTTGAG 528723 Query 119681 AGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 ||||| |||||||| |||||||||| | | |||||| | ||| || Sbjct 528722 TGCCCAATTGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAG 528669 >seq112 Length=9096 Score = 104 bits (114), Expect = 3e-17 Identities = 275/411 (67%), Gaps = 13/411 (3%) Strand=Plus/Minus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647 ||| ||| |||||||| ||||| | || |||||| | ||| || ||||| || ||| Sbjct 5037 TGTTGAAGCCGTCCATCTCTGTCAAAATCTGGTTCAGCGTACTCTCGCGCTCGTCATTGC 4978 Query 11648 -AGGGCATACCACCTGCCGAACGCTT--CTTACCGACAGCGTCAATCTCATCGATGAATA 11704 | | | |||| | ||| ||| || | ||| || |||||||| ||||| | Sbjct 4977 CACCTCCAAATGACTGCTTCGCTCTTGCCTTTCCAATAGCATCGATCTCATCAATGAAGA 4918 Query 11705 CGATACACGGTTGGTTGGCA--CGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCC 11762 ||| || ||| || | | ||||| | ||||||| || || ||||| | || Sbjct 4917 TGATGCATGGT--GTCGACTTTCGTGCATTGGCGAAAAGGTCTCGCACACGGGAAGGACC 4860 Query 11763 AACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAG 11821 ||||| ||||||||||| ||||| | | | || || ||||| ||| || ||| || Sbjct 4859 GACACCGACGAACATCTCCACGAACTCAGATCCCGACACGCTGAA-GAATGGCACACCAG 4801 Query 11822 ACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAA 11881 |||| ||||| ||||| ||||| | |||||||| |||||||||| || | | Sbjct 4800 ACTCGCCAGCCGTGGCTTTTGCGAGTAACGTCTTACCAGTACCAGGTGGTCCGCTCAAGA 4741 Query 11882 GGGCGCCACGGGGGATCTTGGCACCA--CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939 || || | || ||||| || ||| ||| | || |||||||| ||||||||| Sbjct 4740 TCGCACCTCTAGGAATCTTCGCGCCAAGCTT--GGTGAAGATCTCAGGCTGCTTGAGGAA 4683 Query 11940 GTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATC 11990 | ||||| |||| | || |||||| ||| || || ||||||| Sbjct 4682 TTGCACAAACTCCATGATCTCGGTCTTGGCTTCGTCCATGCCAGCAACATC 4632 >seq135 Length=6449 Score = 102 bits (112), Expect = 1e-16 Identities = 306/460 (67%), Gaps = 23/460 (5%) Strand=Plus/Minus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 ||||||||||| || || | || || | || |||| ||| || || || | || Sbjct 2469 TCGAAACGACCCGGTCGCATGAGGGCCTTGTCTAGAACATCTGGTCGATTCGTGCCAGCG 2410 Query 11566 ATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATC 11625 | ||| |||| | | | ||| ||| |||||||| || ||||| | ||| |||| Sbjct 2409 AGGACGACAACTTGATCCGTAGTGTTGAAGCCGTCCATCTCAGTGAGGATCTGATTGAGG 2350 Query 11626 GTCTGTTCACGCTCATCGTTGGAGGGCATACC--AC--CTGCCGAACGCTT--CTTACCG 11679 || || ||||| ||||| | || ||| || |||| | ||| ||| ||| Sbjct 2349 GTGCTCTCGCGCTCGTCGTT--ACCGCC-ACCGAACGACTGCTTTGCTCTTGCCTTGCCG 2293 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGC--ACGTGCCTGTTCGA 11737 | |||||||||||| || ||||| | ||| |||||| || | | ||||| | ||| Sbjct 2292 ATAGCGTCAATCTCGTCAATGAAGATGATGCACGGT--GTCGACTTCCGTGCATTGGCGA 2235 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 | || || || ||||| | || ||||| || |||||||| ||||| | | | | Sbjct 2234 ACAGATCTCGCACACGTGAAGGACCGACACCCACAAACATCTCCACGAACTCAGACCCTG 2175 Query 11798 A-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 | || ||||| |||||| || |||||| ||||| | || ||||| || |||||| Sbjct 2174 ACACGCTGAA-GAAGGGCACGCCAGACTCGCCAGCAGTCGCCTTCGCGAGCAGCGTCTTA 2116 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA--CTTC--C 11912 || ||||| || | ||| | | || || || |||||||| |||||| |||| Sbjct 2115 CCAGTACCGGGCGGACCGCTCAAGATCGCACCTCGAGGGATCTTTGCACCAAGCTTCGTG 2056 Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 ||| | ||| || | |||||||| | ||| | |||| Sbjct 2055 AAAAT----CTCGGGTTGTTTGAGGAACTGCACGAACTCC 2020 >seq2 Length=2712501 Score = 100 bits (110), Expect = 3e-16 Identities = 275/416 (66%), Gaps = 33/416 (8%) Strand=Plus/Plus Query 11589 GTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTG-TTCACGCT--CATCGTT 11645 |||||| ||||||| || || || ||||| |||| |||||| || || || ||| Sbjct 1482897 GTCGAAGCCGTCCAACTCCGTCAGCAGCTGATTGAGCGTCTGCTTGGCGTATGCAGCGTC 1482956 Query 11646 GGAGGGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATAC 11705 | |||| | | | ||||| || || ||||||| |||||||||||| | Sbjct 1482957 GC-GGGCGTGACGCTTGCCG-----------CCTACTGCGTCAAGCTCATCGATGAAGAT 1483004 Query 11706 GATACACGGTTGG----TTGGCACGTGC--CTGTTCGAAAAGTTCACGTACACGCTTCGC 11759 ||| || ||| |||||||| || | || ||| || || || || ||||| || Sbjct 1483005 GAT----GGCTGGGCTTTTGGCACGAGCAGCAGT--GAAGAGGTCGCGGACGCGCTTGGC 1483058 Query 11760 TCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATT 11819 || ||||| ||| | ||||| |||| | | | |||| | | ||| || || Sbjct 1483059 ACCGACACCAACGTAGATCTCGTCGAACTCGGAGCCAGACATGTAGAAGAAAGGTACGCC 1483118 Query 11820 AGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAG 11879 | ||| || || | || ||||||||||| |||||||| ||||| || | ||| | ||| Sbjct 1483119 TGCCTCGCCTGCAACAGCACGAGCGAGGAGCGTCTTACCAGTACCGGGAGGACCTGAGAG 1483178 Query 11880 AAGGGCGCCACGGGGGATCTTGGCACCA---CTTCCAAAGTAGCGCTCAGGCTTCTTGAG 11936 || | || ||| | ||| ||||| ||| | ||| ||| ||| ||| | Sbjct 1483179 CAGCACACCCTTGGGCAGCTTACCACCAAGCGATCC---GAAGCTCTCGGGCGACTTCAA 1483235 Query 11937 GAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGG 11992 ||| ||||||| ||| | || |||||||| || || | ||| | |||||||| Sbjct 1483236 GAATTCCACAACCTCTTGCAGCTCCTCCTTCGCCTCATCAACACCATGAACATCGG 1483291 >seq19 Length=770886 Score = 96.9 bits (106), Expect = 4e-15 Identities = 236/354 (67%), Gaps = 8/354 (2%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||| | |||||| |||||||||||||| |||||||| || | ||| | |||||| Sbjct 62645 GTTTAGCGACTGGGACTGATCGATGAAGGCGCCACGATCGGCTGACATCTGGATGATGTT 62704 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 ||||| || |||||||||||||| |||| | |||||| || ||||| || | Sbjct 62705 GCGCTGGCTGATCTCCCAGACAGTCTTATACAGCTCCTTGATCTCGTCGGGGATATTGGG 62764 Query 109620 GATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCG-ACCAGA 109678 ||| || |||||||||||| | | ||| | | |||||| | | ||| ||||| Sbjct 62765 AATGCGCTGGATAGAGCCACCATCTGCGATGATGCGGTTCTTCATGT-TGTCGCTCCAGA 62823 Query 109679 GACCGACCTTTTTGAGATCGTCAACAAGATGC---TTGTTGACCACGACAAATTCACCAG 109735 | | || | | || | ||| || || |||||| || || || || | Sbjct 62824 G---GCCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACGACTTGGAACTCGCCGG 62880 Query 109736 CAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTA 109795 | || || || ||||||||| | ||||| || || || ||||||||| || | Sbjct 62881 CCAGGACACGACGAGAGTAGATGTTGCTGGTGTACGGCTCAAAGCACTCATTGAACCCCA 62940 Query 109796 GGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 ||| || | ||| ||||||||||| || || | ||| ||| ||| |||| Sbjct 62941 TGATCTGCGATGTGCTTGCTGTGGGCATAGGCGCGACGAGCAGAGAGTTGCGGA 62994 >seq16 Length=936305 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 656155 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGT 656213 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 749336 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGT 749394 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 791110 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGT 791168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974291969600