Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 149 7e-31 >seq1 Length=3303888 Score = 149 bits (164), Expect = 7e-31 Identities = 342/502 (68%), Gaps = 16/502 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || |||||||| |||||||| ||||| || | ||| ||||| ||||| Sbjct 529198 TAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCATG 529139 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCA--AATGG--GTGGCACCCCAACTTGTTTGAGGAG 117101 ||||| || || || | ||||| | | | | ||||| ||| | ||| || Sbjct 529138 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCTGTGGC----CAAGTGCGAGGAGTAG 529083 Query 117102 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT 117161 ||||| | ||| |||| ||||||| | |||| || | |||||| |||| || Sbjct 529082 GCGATCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGC 529023 Query 117162 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 117221 || || || |||||| ||| |||| ||| ||||||||| || || || | | ||| Sbjct 529022 GCAGGGCAGGGCGTCCGAGAGGAACTCTTGCTCAATCTCGACAGCTTCCGTGATGATCTG 528963 Query 117222 GTGGATAGTTTCG-GTAGTGGGTCTATTACGCAAA-GT-CTTGAAGAGCTCCACGGCAAA 117278 ||||| ||| || ||| | | || || | | || | || || | || ||| || Sbjct 528962 GTGGACGAGGTCGAGTGATGGCT-TGTTGCGGAGATGTGCGTGCAGCA-TGCA-GGCGAA 528906 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 || ||| | ||||| || ||||| || || || || |||||| ||||| ||||| Sbjct 528905 GTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAT 528846 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 ||| || |||||||||| ||| | || ||| |||||| || ||||||||||||||||| Sbjct 528845 GAGCCCGCGCTTCTTCAGCCAGAAGATGGCGGCGAATGAGCCAGAGAAGAAGATACCCTC 528786 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATT 117457 ||| || || || | || || | |||||| ||| | | || | | ||| | Sbjct 528785 GACAGCTGCGAAAGCGATGAGACGGCAGCCGAAGG-TCGATGCATCGTCGCTGATCCACT 528727 Query 117458 TCATTGCCCATTTCGCCTTCTT 117479 | | |||||| || |||||||| Sbjct 528726 TGAGTGCCCAATTGGCCTTCTT 528705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979089055680